View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_73 (Length: 248)
Name: NF17452_low_73
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 46936092 - 46935895
Alignment:
| Q |
36 |
ttgtaagtctattgtattcatacaaattttgataaaaatattttgaatatctggcacagttggtatgttacagggaaaaaa-ggatttacatcattgaca |
134 |
Q |
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| T |
46936092 |
ttgtaagttgattgaatccataaaaattttgataaaaatattttgaatatctggcacagttggtatgttataggaaaaaaaagggtttacatcattgaca |
46935993 |
T |
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| Q |
135 |
attttcattttgatatggtgcaggttgttttccctagctttggttagaggtacctatcctctgtgctgtttgaatcggtgagacgggaggctgaaagc |
232 |
Q |
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| T |
46935992 |
attttcattttgatatggtgcaggttgttttccctagctttggtgagaggtacctatcctctgtgctgtttgaatcggtgagacgggaggctgaaagc |
46935895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 865163 - 865253
Alignment:
| Q |
140 |
cattttgatatggtgcaggttgttttccctagctttggttagaggtacctatcctctgtgctgtttgaatcggtgagacgggaggctgaaa |
230 |
Q |
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| T |
865163 |
cattttgacatggtgcaggtcgtttttccaagctttggcgagaggtacctgtcctctgtgctatttgagtcagtgagacgggaagctgaaa |
865253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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