View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_75 (Length: 247)
Name: NF17452_low_75
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_75 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 1699815 - 1700043
Alignment:
| Q |
5 |
tatgcaataaaggggaaaacaaagataatgataaacatgtagcttataataaattaattaccaagacataaatatccaatgggtggatgagagcatatgt |
104 |
Q |
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| T |
1699815 |
tatgcaataaaggggaaaacaaagataatgataaacatctagcttataataaattaattaccaagacataaatatccaatgggtggatgagagcatatgt |
1699914 |
T |
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| Q |
105 |
tgtccagcacaaaccattgaggaagttggttagagagagccaaaatggcatgtatttcacactcttggtttttataaccttggcctgttcattatataca |
204 |
Q |
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| T |
1699915 |
tgtccagcacaaaccattgaggaagttggttagagagagccaaaatggcatgtatttcacactcttggtttttataaccttggcctgttcattatataca |
1700014 |
T |
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| Q |
205 |
tcaagaagagatatataaaattaaaattg |
233 |
Q |
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| T |
1700015 |
tcaagaagagatatataaaattaaaattg |
1700043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 1694778 - 1694919
Alignment:
| Q |
60 |
aattaccaagacataaatatccaatgggtggatgagagcatatgttgtccagcacaaaccattgaggaagttggttagagagagccaaaatggcatgtat |
159 |
Q |
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| T |
1694778 |
aattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagttggtaagagagagccagaatggcatgtat |
1694877 |
T |
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| Q |
160 |
ttcacactcttggtttttataaccttggcctgttcattatat |
201 |
Q |
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| T |
1694878 |
ttcacactcttggttcttataaccgttgcctgttcatcatat |
1694919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 1674180 - 1674322
Alignment:
| Q |
59 |
taattaccaagacataaatatccaatgggtggatgagagcatatgttgtccagcacaaaccattgaggaagttggttagagagagccaaaatggcatgta |
158 |
Q |
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| T |
1674180 |
taattaccaggagataaatgtcgaaggggttgatgagagcatatgttgtccaacacaatccattaagaaagatagccagagagggcaagaatggcatgta |
1674279 |
T |
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| Q |
159 |
tttcacactcttggtttttataaccttggcctgttcattatat |
201 |
Q |
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| T |
1674280 |
tttcacactctttgtttttataacattttcctgttcattatat |
1674322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 1684377 - 1684468
Alignment:
| Q |
94 |
agagcatatgttgtccagcacaaaccattgaggaagttggttagagagagccaaaatggcatgtatttcacactcttggtttttataacctt |
185 |
Q |
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| T |
1684377 |
agagcatatgttgtccagcaaagtccattgaggaagttaaacacagagagccagaatggcatgtatttcacactcttagtcgttataacctt |
1684468 |
T |
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