View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17452_low_77 (Length: 245)

Name: NF17452_low_77
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17452_low_77
NF17452_low_77
[»] chr6 (13 HSPs)
chr6 (32-239)||(21150199-21150401)
chr6 (104-179)||(21181559-21181634)
chr6 (85-150)||(21352233-21352299)
chr6 (122-185)||(31106485-31106548)
chr6 (106-180)||(21267154-21267228)
chr6 (107-185)||(31094768-31094846)
chr6 (88-156)||(21190469-21190538)
chr6 (106-178)||(21136783-21136855)
chr6 (57-174)||(21147277-21147401)
chr6 (111-178)||(21233462-21233530)
chr6 (96-148)||(21313062-21313114)
chr6 (57-114)||(21184371-21184429)
chr6 (89-174)||(21279840-21279926)
[»] scaffold0016 (2 HSPs)
scaffold0016 (104-234)||(65142-65275)
scaffold0016 (71-149)||(74842-74921)
[»] scaffold0060 (1 HSPs)
scaffold0060 (100-160)||(20109-20168)
[»] scaffold0202 (1 HSPs)
scaffold0202 (107-185)||(3484-3562)
[»] chr8 (1 HSPs)
chr8 (119-172)||(24944361-24944414)
[»] scaffold0272 (1 HSPs)
scaffold0272 (145-185)||(3455-3495)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 32 - 239
Target Start/End: Original strand, 21150199 - 21150401
Alignment:
Q  32 caaataaatccaattgataaaaaacgagaaattgaggaaaaaattgaggatccaaagtctaatgt-aaggaagaggagaatgatgaagatgctttattag 130  Q
    ||||||||| |||||||||||  | ||||||||||||||||| |||||      ||||||||||| |||||||| |||||| ||||||||||||||||||    
T  21150199 caaataaatacaattgataaatgaagagaaattgaggaaaaagttgag------aagtctaatgttaaggaagaagagaataatgaagatgctttattag 21150292  T
Q  131 atgcacatgaaacattgtcacatttaacataatcattttaaatacattatatattaactattgatattgatttggattattaccctgtagtttatggtag 230  Q
    |||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21150293 atgcacatgaaacactctcacatttaacataatcaatttaaatacattatatattaactattgatattgatttggattattaccctgtagtttatggtag 21150392  T
Q  231 tattatcta 239  Q
    |||| ||||    
T  21150393 tattgtcta 21150401  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 21181559 - 21181634
Alignment:
Q  104 aggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacatta 179  Q
    |||||||| |||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  21181559 aggagaataatgatgatgcttttttagatgctcatgaaacattgtcacatttaacataatcatttttaatacatta 21181634  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 21352233 - 21352299
Alignment:
Q  85 aaagtctaatgt-aaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtca 150  Q
    |||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||| |||||||||||    
T  21352233 aaagtctaatgttaaggaagtggagaatgatgaacatgttttattagatgcacataaaacattgtca 21352299  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 31106548 - 31106485
Alignment:
Q  122 ctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatatatt 185  Q
    |||| |||||||||||||||||| | |||||||||||| ||||||||||||| |||||| ||||    
T  31106548 cttttttagatgcacatgaaacactatcacatttaacaaaatcattttaaatgcattatgtatt 31106485  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 21267154 - 21267228
Alignment:
Q  106 gagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattat 180  Q
    |||||||||||| ||| ||| |||||||||||| |||||  ||||| || |||||||||||||||||| ||||||    
T  21267154 gagaatgatgaaaatgattttttagatgcacataaaacaccgtcactttcaacataatcattttaaatgcattat 21267228  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 31094768 - 31094846
Alignment:
Q  107 agaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatatatt 185  Q
    |||||||||| ||| |||| ||||||||||||||| ||  ||| ||||||||| || ||||||||||||||||| ||||    
T  31094768 agaatgatgatgatacttttttagatgcacatgaagcaccgtcgcatttaacaaaaccattttaaatacattatgtatt 31094846  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 21190469 - 21190538
Alignment:
Q  88 gtctaatgt-aaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtcacattta 156  Q
    ||||||||| |||||||| |||||  || |||||||||| ||||||| ||||||||||||||||||||||    
T  21190469 gtctaatgttaaggaagatgagaacaattaagatgcttttttagatgaacatgaaacattgtcacattta 21190538  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 21136783 - 21136855
Alignment:
Q  106 gagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacatt 178  Q
    |||||||||||| ||||||| |||||||||||| ||||| ||||||  |||||||| | ||||||||| ||||    
T  21136783 gagaatgatgaaaatgcttttttagatgcacataaaacagtgtcactcttaacatattaattttaaatgcatt 21136855  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 174
Target Start/End: Original strand, 21147277 - 21147401
Alignment:
Q  57 gagaaattgaggaaaaaattgaggatccaaagtctaatgt-aaggaagaggagaatgatgaagatg-ctttattagatgcacatg-----aaacattgtc 149  Q
    |||||||||| |||||| ||||| ||  |||||||||||| ||||||||||||||||||||  |||  ||| || ||||||||||     ||||| ||||    
T  21147277 gagaaattgacgaaaaagttgagaatagaaagtctaatgttaaggaagaggagaatgatgactatgttttttttggatgcacatgacataaaacaatgtc 21147376  T
Q  150 acatttaacataatcattttaaata 174  Q
    ||||| |||| ||||||||||||||    
T  21147377 acattaaacagaatcattttaaata 21147401  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 21233462 - 21233530
Alignment:
Q  111 tgatgaagatgctttatta-gatgcacatgaaacattgtcacatttaacataatcattttaaatacatt 178  Q
    ||||||||||| ||| ||| ||||| ||||||||||| |||||||||||| ||||||| |||| |||||    
T  21233462 tgatgaagatgtttttttatgatgcgcatgaaacattttcacatttaacagaatcattataaacacatt 21233530  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 21313062 - 21313114
Alignment:
Q  96 taaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgt 148  Q
    |||||||||||| ||||| ||||||||||  ||||||||||| ||||||||||    
T  21313062 taaggaagaggacaatgacgaagatgcttctttagatgcacacgaaacattgt 21313114  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 21184371 - 21184429
Alignment:
Q  57 gagaaattgaggaaaaaattgaggatccaaagtctaatg-taaggaagaggagaatgat 114  Q
    ||||||||||||||||| ||||| ||  ||||||| ||| |||||||||||||||||||    
T  21184371 gagaaattgaggaaaaagttgagaatagaaagtctgatgttaaggaagaggagaatgat 21184429  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 21279840 - 21279926
Alignment:
Q  89 tctaatgtaaggaa-gaggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaata 174  Q
    |||||||||| ||| || |||||||||||||||||||| | ||||  |||||||||  |||||| | ||| | ||||||||||||||    
T  21279840 tctaatgtaaagaaagatgagaatgatgaagatgctttttaagatatacatgaaactgtgtcacgtataatagaatcattttaaata 21279926  T

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Target: scaffold0016 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 104 - 234
Target Start/End: Complemental strand, 65275 - 65142
Alignment:
Q  104 aggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatatattaactattgatattgattt 203  Q
    |||||||||||||||||||||| ||| |||||||||||||| | |||||||||||||||||||| ||||||||||||||||| || |||||||||| |||    
T  65275 aggagaatgatgaagatgcttttttaaatgcacatgaaacactatcacatttaacataatcattgtaaatacattatatatttaccattgatattgcttt 65176  T
Q  204 ggatta---ttaccctgtagtttatggtagtatt 234  Q
    | ||||   |||| ||||||||||||||||||||    
T  65175 gaattatacttactctgtagtttatggtagtatt 65142  T

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Target: scaffold0016; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 74921 - 74842
Alignment:
Q  71 aaaattgaggatccaaagtctaatgt-aaggaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtc 149  Q
    ||||||||| ||  |||||||||||| ||||||||||||||| |||||| |||||||||||||| |||||||||||||||    
T  74921 aaaattgagaatagaaagtctaatgttaaggaagaggagaataatgaaggtgctttattagatgaacatgaaacattgtc 74842  T

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Target: scaffold0060 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 20109 - 20168
Alignment:
Q  100 gaagaggagaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacat 160  Q
    ||||||||||||||||| | |||||| |||||||||||||||| |||||||||| ||||||    
T  20109 gaagaggagaatgatgatgttgcttt-ttagatgcacatgaaagattgtcacatataacat 20168  T

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Target: scaffold0202 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 3484 - 3562
Alignment:
Q  107 agaatgatgaagatgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaatacattatatatt 185  Q
    ||||||| || ||| |||| ||||| ||||||||| || || ||||||||||| || ||||||||||||||||| ||||    
T  3484 agaatgacgatgatacttttttagaagcacatgaagcactgccacatttaacaaaaccattttaaatacattatgtatt 3562  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 24944361 - 24944414
Alignment:
Q  119 atgctttattagatgcacatgaaacattgtcacatttaacataatcattttaaa 172  Q
    ||||||| | |||||||||| ||| |||||||||||||||| ||||||| ||||    
T  24944361 atgctttttcagatgcacataaaatattgtcacatttaacaaaatcattataaa 24944414  T

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Target: scaffold0272 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 3495 - 3455
Alignment:
Q  145 ttgtcacatttaacataatcattttaaatacattatatatt 185  Q
    ||||||||||||||| ||||||||| |||||||||| ||||    
T  3495 ttgtcacatttaacagaatcattttgaatacattatgtatt 3455  T

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