View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_79 (Length: 242)
Name: NF17452_low_79
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_79 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 69 - 242
Target Start/End: Original strand, 10335819 - 10335997
Alignment:
| Q |
69 |
agtatcagccacttgtggttgaaggcgtgttctgtgtcacacctatcaatattcagtgtttgtgtc-----agtgtcattgtgaattatgtattgttctc |
163 |
Q |
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| T |
10335819 |
agtatcagccacttgtggtcgaaggcgtgttctgtgtcacacctatcaatattcagtgtctgtgtcgtgtcaatgtcattgtgaattatgtattgttctc |
10335918 |
T |
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| Q |
164 |
aaattactatcaccgtcaaagtgtcggtgtcttggtgtcgtgttcggtgtatgtgttaatgcttcataacttgtgatgc |
242 |
Q |
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| T |
10335919 |
aaattactatcaccgtcaaagtgtcagtgtcttggtgtcgtgttcggtgtatgtgttaatgcttcataacttgtgatgc |
10335997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 10334592 - 10334640
Alignment:
| Q |
18 |
aatagcgatttgtttaaattctgctacgctacaatgctattgcgccatt |
66 |
Q |
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| T |
10334592 |
aatagcgatttgtttaaattctgctacgctacaatgctattgcgccatt |
10334640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 21901371 - 21901333
Alignment:
| Q |
15 |
gaaaatagcgatttgtttaaattctgctacgctacaatg |
53 |
Q |
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| T |
21901371 |
gaaaatagcactttgtttaaattctgctacgctacaatg |
21901333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 43473038 - 43472996
Alignment:
| Q |
13 |
cagaaaatagcgatttgtttaaattctgctacgctacaatgct |
55 |
Q |
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| T |
43473038 |
cagaaaatagtggtttgtttaaattctgttacgctacaatgct |
43472996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 10088671 - 10088699
Alignment:
| Q |
18 |
aatagcgatttgtttaaattctgctacgc |
46 |
Q |
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| T |
10088671 |
aatagcgatttgtttaaattctgctacgc |
10088699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 50322157 - 50322117
Alignment:
| Q |
17 |
aaatagcgatttgtttaaattctgctacgctacaatgctat |
57 |
Q |
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| T |
50322157 |
aaatagcagtttgtttaaattctgctacggtacaatgctat |
50322117 |
T |
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