View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17452_low_85 (Length: 237)
Name: NF17452_low_85
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_85 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 12569322 - 12569542
Alignment:
| Q |
1 |
cagacaatgtgtttagctgattgttgaatttgtgttgactagatgattagttgcatatctttaatttaacttgacttgagtttggtcgtcttttaccatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12569322 |
cagacaatgtgtttagctgattgttgactttgtgttgactagataattagttgcatatctttaatttaacttgacttgagcttggtcgtcttttaccatg |
12569421 |
T |
|
| Q |
101 |
tgttcatactctaaaggtttagtgtgcttctgatagtttggattccttgattcttctaataatactgtgtttagctagctatacttgatgattgttgaga |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12569422 |
tgttcatactctaaaggttcagtgtgcttctgatagtttggattccttgattcttctaataatactgtgtttagctagttatacttgatgattgttgaga |
12569521 |
T |
|
| Q |
201 |
cactaaaatcatgcacacttg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12569522 |
cactaaaatcatgcacacttg |
12569542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University