View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_86 (Length: 235)
Name: NF17452_low_86
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_86 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 6525979 - 6525780
Alignment:
| Q |
19 |
taatgctcatctatataatttctgtcaaaccattttgtttacacaagcacatcagatatatcagcatcttgtttactgaatagagacggattgtgacagt |
118 |
Q |
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| T |
6525979 |
taatgctcatctgtataatttctatcaaaccattttgtttacacaagcacatcagatatatcagcatcttgtttactgaatagagacggattgtgacagt |
6525880 |
T |
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| Q |
119 |
ttacatcaaataactgcctaacctcccagttgcataacttccctatgtattttaaaaaataataattaagacactctaggataaaattgactacatccta |
218 |
Q |
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| T |
6525879 |
ttacatcaaataactgcctaacctcccagttgcataacttccctatgtattttaaaaaataataattaagacacactaggataaaattgactacatccta |
6525780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 6526046 - 6526001
Alignment:
| Q |
19 |
taatgctcatctatataatttctgtcaaaccattttgtttacacaa |
64 |
Q |
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|||||||| | ||| |||||||||| |||||||||||||||||||| |
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| T |
6526046 |
taatgctcttttatttaatttctgtaaaaccattttgtttacacaa |
6526001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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