View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17452_low_87 (Length: 231)
Name: NF17452_low_87
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_87 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 26664762 - 26664963
Alignment:
| Q |
13 |
cacagaaaatagtggtttatttaaattccgctataatgcagtgttataacatcgctggagccgctattcaataacacggtcaatatagggcaccttaaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26664762 |
cacagaaaatagtggtttatttaaattccgctataatgcagtgttataacatcgctggagccgctattcaataacacggtcaatatagggcaccttaaca |
26664861 |
T |
|
| Q |
113 |
tcatgtgataatcatcgtgcttctgaggaagcaattcatccatgatcaacgatttccgaaacgcatcaacaacagcaggaacaacatcaacagcctgtaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26664862 |
tcatgtgataatcatcgtgcttctgaggaagcaattcatccatgatcaacaatttccgaaacgcatcaacaacagcaggaacaacattaacagcctgtaa |
26664961 |
T |
|
| Q |
213 |
ct |
214 |
Q |
| |
|
|| |
|
|
| T |
26664962 |
ct |
26664963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 26658669 - 26658777
Alignment:
| Q |
84 |
taacacggtcaatatagggcaccttaacatcatgtgataatcatcgtgcttctgaggaagcaattcatccatgatcaacgatttccgaaacgcatcaaca |
183 |
Q |
| |
|
||||||| ||||||| |||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26658669 |
taacacgaccaatatacggcaccttaacatcttatgataatcatcgtgcttctcgggaagcaattcatccatgatcaacgatttccgaaaggcatcaaca |
26658768 |
T |
|
| Q |
184 |
acagcagga |
192 |
Q |
| |
|
||||||||| |
|
|
| T |
26658769 |
acagcagga |
26658777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 26643999 - 26644055
Alignment:
| Q |
139 |
ggaagcaattcatccatgatcaacgatttccgaaacgcatcaacaacagcaggaaca |
195 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| ||||||||| ||||||||||| |
|
|
| T |
26643999 |
ggaagcaattcatcgatgatcaacgattgccgaaaagcatcaacagcagcaggaaca |
26644055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University