View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_89 (Length: 227)
Name: NF17452_low_89
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 18193568 - 18193760
Alignment:
| Q |
17 |
atcgtcaaatgagtactgtcttgacctttggatcagattctcctgttatgtcttcaacttcacttgccacgaaaatgaatgttggatcagatgatgaaat |
116 |
Q |
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| T |
18193568 |
atcgtcaaatgagtactgtcttgacctttggatcagattctcctgttatgtcttcaacttcacttgccacgaaaatgaatgttggatcagatgatgaaat |
18193667 |
T |
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| Q |
117 |
atctgacaagagtaatcagtgnnnnnnnccacaacagtttccatggaacccagcaatgtgttatgctgtgtcattccaacccaatatagctta |
209 |
Q |
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| T |
18193668 |
atctgataagagtaatcagtgtttttttccacaacagtttccatggaacccagcaatgtgttatcctgtgtcattccaacccaatatagctta |
18193760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 18188330 - 18188516
Alignment:
| Q |
20 |
gtcaaatgagtactgtcttgacctttggatcagattctcctgttatgtcttcaacttcacttgccacgaaaatgaatgttggatcagatgatgaaatatc |
119 |
Q |
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| T |
18188330 |
gtcaaatgagtactgtcttgacctttggatcagattctcctaatatgtcttcaacttcacttgccaagaaaatgaatgttggatcagataatgaaacatt |
18188429 |
T |
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| Q |
120 |
tgacaagagtaatcagtgnnnnnnnccacaacagtttccatggaacccagcaatgtgttatgctgtgtcattccaacccaatatagc |
206 |
Q |
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| T |
18188430 |
tgataagagtaatcagtgtttttttcctcaacagtttccatggaacccagcaatgtgttatcctgtgtcattccaacccaatatagc |
18188516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 18230971 - 18231075
Alignment:
| Q |
30 |
tactgtcttgacctttggatcagattctcctgttatgtcttcaacttcacttgccacgaaaatgaatgttggatcagatgatgaaatatctgacaagagt |
129 |
Q |
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| T |
18230971 |
tactatcttgacctttggatcagattctcctagtatgtcttcaacttcactcgacaagaaagtgaatgttgcatcacatgaagaaacatttgataagagt |
18231070 |
T |
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| Q |
130 |
aatca |
134 |
Q |
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|||| |
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| T |
18231071 |
tatca |
18231075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 18198349 - 18198415
Alignment:
| Q |
16 |
tatcgtcaaatgagtactgtcttgacctttggatcagattctcctgttatgtcttcaacttcacttg |
82 |
Q |
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| T |
18198349 |
tatcatcaaatgagtactgtcttgacctttggatcggattctcctatcatgtcttcaagttcacttg |
18198415 |
T |
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