View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17452_low_9 (Length: 610)

Name: NF17452_low_9
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17452_low_9
NF17452_low_9
[»] chr4 (9 HSPs)
chr4 (69-239)||(9601715-9601880)
chr4 (254-381)||(9605370-9605495)
chr4 (487-590)||(9605266-9605369)
chr4 (360-448)||(9580693-9580781)
chr4 (360-448)||(9586388-9586476)
chr4 (191-255)||(9574396-9574460)
chr4 (487-531)||(9592525-9592569)
chr4 (182-246)||(9592954-9593018)
chr4 (298-340)||(9592445-9592487)
[»] chr6 (5 HSPs)
chr6 (254-340)||(29142179-29142265)
chr6 (472-510)||(30036201-30036239)
chr6 (472-510)||(30151937-30151975)
chr6 (360-429)||(30036297-30036366)
chr6 (360-429)||(30152033-30152102)
[»] scaffold0110 (1 HSPs)
scaffold0110 (361-429)||(41406-41474)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 6e-51; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 69 - 239
Target Start/End: Complemental strand, 9601880 - 9601715
Alignment:
Q  69 attcaaatttccatacaagtatctgtttgctgcctcttctcattcgcaaatatcatctcccatctactgccaccatgatactgctatccccacaaactgt 168  Q
    |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||  |  ||||||||||||||    
T  9601880 attcaaatctccatacaagtatctgtttgctgcctcctctcattcacaaatatcatctcccatctaccgccgccatgataccacagtccccacaaactgt 9601781  T
Q  169 tgttagatgaaacgagtattacttcttatttacgttgtagttgctttaccgagttgcctgattcataaact 239  Q
    ||||||||     ||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||    
T  9601780 tgttagat-----gagtattacttcttatttacgttgtagtttctttaccaagttgcttgattcataaact 9601715  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 254 - 381
Target Start/End: Complemental strand, 9605495 - 9605370
Alignment:
Q  254 ccatcataacagcttaattagcattggataataaagtaagattgaataggtattaactataacggaccttcttgattgttaaataatccatatacatgat 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||  |||||||||    
T  9605495 ccatcataacagcttaattagcattggataataaagtaagattgaataggtattaactataatgaaccttcttgattgttaaataatcc--atacatgat 9605398  T
Q  354 catccgttatcattaacaatatcaatgg 381  Q
    ||||  ||||||||||||||||||||||    
T  9605397 catctcttatcattaacaatatcaatgg 9605370  T

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Target: chr4; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 487 - 590
Target Start/End: Complemental strand, 9605369 - 9605266
Alignment:
Q  487 ttcccttcccactaattcttttagtaatttggtctatagcagatgaaaatgtacttcatgttcaaacggactgcaatgtttcgaccttagtttggaaaag 586  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9605369 ttcccttcccaccaattcttttagtaatttggtctatagcagatgaaaatgtacttcatgttcaaacggactgcaatgtttcgaccttagtttggaaaag 9605270  T
Q  587 cact 590  Q
    ||||    
T  9605269 cact 9605266  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 360 - 448
Target Start/End: Complemental strand, 9580781 - 9580693
Alignment:
Q  360 ttatcattaacaatatcaatgggattcacttcatttcagtt-tctttctctatgcaaattgcaatcagcttaccttgtttagaagcctta 448  Q
    ||||||||||||| |||||| ||||||||||||  |||||| ||||| | | ||||||||||||||||||||||||||||||||||||||    
T  9580781 ttatcattaacaacatcaattggattcacttcaactcagttatcttttt-tctgcaaattgcaatcagcttaccttgtttagaagcctta 9580693  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 360 - 448
Target Start/End: Complemental strand, 9586476 - 9586388
Alignment:
Q  360 ttatcattaacaatatcaatgggattcacttcatttcagtt-tctttctctatgcaaattgcaatcagcttaccttgtttagaagcctta 448  Q
    ||||||||||||| |||||| ||||||||||||  |||||| ||||| | | ||||||||||||||||||||||||||||||||||||||    
T  9586476 ttatcattaacaacatcaattggattcacttcaactcagttatcttttt-tctgcaaattgcaatcagcttaccttgtttagaagcctta 9586388  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 9574396 - 9574460
Alignment:
Q  191 ttcttatttacgttgtagttgctttaccgagttgcctgattcataaactgaatttgtacttgtcc 255  Q
    |||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||    
T  9574396 ttcttatttatgttgtggtttctttaccgagttgcttgattcataaactgaatttgtacttgtcc 9574460  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 531
Target Start/End: Complemental strand, 9592569 - 9592525
Alignment:
Q  487 ttcccttcccactaattcttttagtaatttggtctatagcagatg 531  Q
    |||||||||||| ||||||||||||||| | ||||||||||||||    
T  9592569 ttcccttcccaccaattcttttagtaatatagtctatagcagatg 9592525  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 9593018 - 9592954
Alignment:
Q  182 gagtattacttcttatttacgttgtagttgctttaccgagttgcctgattcataaactgaatttg 246  Q
    |||||||||||||||||||  |||| ||| |||||| ||||||| |||||| || ||||||||||    
T  9593018 gagtattacttcttatttatattgtggtttctttacggagttgcttgattcgtagactgaatttg 9592954  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 9592487 - 9592445
Alignment:
Q  298 aataggtattaactataacggaccttcttgattgttaaataat 340  Q
    ||||||||| |||||||| |||| |||||||||||||||||||    
T  9592487 aataggtataaactataatggactttcttgattgttaaataat 9592445  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 254 - 340
Target Start/End: Original strand, 29142179 - 29142265
Alignment:
Q  254 ccatcataacagcttaattagcattggataataaagtaagattgaataggtattaactataacggaccttcttgattgttaaataat 340  Q
    ||||||||||||||||||| |||||||||||||| ||||||| ||||| | || ||| |||| | | |||| |||||||||||||||    
T  29142179 ccatcataacagcttaatttgcattggataataatgtaagatagaataagcataaacaataatgcagcttcatgattgttaaataat 29142265  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 510
Target Start/End: Complemental strand, 30036239 - 30036201
Alignment:
Q  472 gaacttactccatgcttcccttcccactaattcttttag 510  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  30036239 gaacttactccatggttcccttcccacaaattcttttag 30036201  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 510
Target Start/End: Complemental strand, 30151975 - 30151937
Alignment:
Q  472 gaacttactccatgcttcccttcccactaattcttttag 510  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  30151975 gaacttactccatggttcccttcccacaaattcttttag 30151937  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 429
Target Start/End: Complemental strand, 30036366 - 30036297
Alignment:
Q  360 ttatcattaacaatatcaatgggattcacttcatttcagtttctttctctatgcaaattgcaatcagctt 429  Q
    |||||||||| || | |||| ||||||| || | ||||| || ||||||| |||||||||||||||||||    
T  30036366 ttatcattaagaacaccaattggattcagtttaattcaggttatttctctgtgcaaattgcaatcagctt 30036297  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 429
Target Start/End: Complemental strand, 30152102 - 30152033
Alignment:
Q  360 ttatcattaacaatatcaatgggattcacttcatttcagtttctttctctatgcaaattgcaatcagctt 429  Q
    |||||||||| || | |||| ||||||| || | ||||| || ||||||| |||||||||||||||||||    
T  30152102 ttatcattaagaacaccaattggattcagtttaattcaggttatttctctgtgcaaattgcaatcagctt 30152033  T

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Target: scaffold0110 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 361 - 429
Target Start/End: Original strand, 41406 - 41474
Alignment:
Q  361 tatcattaacaatatcaatgggattcacttcatttcagtttctttctctatgcaaattgcaatcagctt 429  Q
    |||||||||||| | |||| |||||||||||| ||||| || ||||||| |||||||||||||||||||    
T  41406 tatcattaacaacaccaattggattcacttcacttcaggttatttctctgtgcaaattgcaatcagctt 41474  T

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