View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_91 (Length: 223)
Name: NF17452_low_91
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_91 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 477297 - 477104
Alignment:
| Q |
15 |
ttattctcaaataagggttttgtaatttatccattaaaagttattataactaaagacattgcgggaaatagaaacatagaaggatgcaaaaatgaaat-- |
112 |
Q |
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| T |
477297 |
ttattctcaaataagggttttgtaatttatccattaaaagttattataactaaagacattgcgggaaatagaaacatagaaggatgcaaaaatgaaatta |
477198 |
T |
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| Q |
113 |
-taacccaaaaaactattttaaaaagttgttggatgcacctttcaccttataataatgacttgctgaactcaacctttgctgagggtgagtttt |
205 |
Q |
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| T |
477197 |
ctaacccaaaaaactattttaaaaagttgttggatgcacctttcaccttataataatgacttgctgaactcaacctttgctgagggtgagtttt |
477104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 777076 - 777166
Alignment:
| Q |
80 |
aaatagaaacatagaaggatgcaaaaatgaaatta----acccaaaaaactattttaaaaagttgttggatgcacctttcaccttataata |
166 |
Q |
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| T |
777076 |
aaatagaaacagagaaggatgcaaaaataacattactaaaccaaacaatctatctttaaaagttgttgaatgcacctttcaccttataata |
777166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 5360119 - 5360170
Alignment:
| Q |
129 |
tttaaaaagttgttggatgcacctttcaccttataataatgacttgctgaactca |
183 |
Q |
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| T |
5360119 |
tttaaaaatttgttggatgcacctttcaccttataa---tgacttgatgaactca |
5360170 |
T |
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