View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17452_low_92 (Length: 220)

Name: NF17452_low_92
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17452_low_92
NF17452_low_92
[»] chr8 (18 HSPs)
chr8 (91-213)||(28901394-28901516)
chr8 (95-201)||(24120174-24120280)
chr8 (114-213)||(12956451-12956550)
chr8 (94-201)||(14977173-14977280)
chr8 (83-194)||(11310277-11310388)
chr8 (84-186)||(16052358-16052460)
chr8 (92-213)||(22894584-22894709)
chr8 (99-201)||(6358645-6358747)
chr8 (92-213)||(16054234-16054355)
chr8 (91-180)||(28252468-28252557)
chr8 (115-192)||(13082012-13082090)
chr8 (106-201)||(32239241-32239336)
chr8 (129-213)||(29047373-29047454)
chr8 (113-213)||(26882368-26882469)
chr8 (129-213)||(5570195-5570279)
chr8 (119-201)||(28902056-28902138)
chr8 (84-190)||(29291703-29291809)
chr8 (106-152)||(30543717-30543763)
[»] chr5 (19 HSPs)
chr5 (92-213)||(24841693-24841814)
chr5 (92-211)||(17382091-17382210)
chr5 (92-210)||(25594749-25594867)
chr5 (91-194)||(17027466-17027569)
chr5 (92-194)||(12340087-12340187)
chr5 (115-201)||(24517317-24517403)
chr5 (108-192)||(30072134-30072218)
chr5 (75-165)||(22229732-22229822)
chr5 (91-187)||(11274411-11274506)
chr5 (106-201)||(18222447-18222542)
chr5 (84-199)||(22967910-22968025)
chr5 (95-193)||(16622741-16622838)
chr5 (114-213)||(16634007-16634107)
chr5 (142-213)||(25680586-25680657)
chr5 (83-213)||(15205576-15205704)
chr5 (115-161)||(22754911-22754957)
chr5 (108-176)||(25075328-25075396)
chr5 (108-176)||(25133297-25133365)
chr5 (126-210)||(26330125-26330209)
[»] scaffold0171 (2 HSPs)
scaffold0171 (93-211)||(6137-6255)
scaffold0171 (91-213)||(21336-21458)
[»] chr7 (19 HSPs)
chr7 (91-213)||(29544458-29544580)
chr7 (92-194)||(7142038-7142140)
chr7 (93-213)||(22067860-22067980)
chr7 (91-213)||(23124840-23124961)
chr7 (108-194)||(20446194-20446281)
chr7 (92-194)||(7494651-7494753)
chr7 (83-213)||(9066063-9066193)
chr7 (115-212)||(7815285-7815383)
chr7 (84-194)||(20470883-20470993)
chr7 (139-213)||(315172-315246)
chr7 (127-201)||(9385463-9385537)
chr7 (92-213)||(21471737-21471858)
chr7 (140-213)||(1255267-1255340)
chr7 (96-213)||(21545853-21545969)
chr7 (106-192)||(46054652-46054738)
chr7 (89-150)||(2353357-2353418)
chr7 (83-151)||(4092603-4092671)
chr7 (88-156)||(19140085-19140153)
chr7 (88-156)||(20739484-20739552)
[»] chr3 (17 HSPs)
chr3 (92-201)||(33914628-33914737)
chr3 (84-194)||(13911197-13911307)
chr3 (91-194)||(25919537-25919640)
chr3 (93-213)||(1475334-1475454)
chr3 (81-194)||(19219284-19219397)
chr3 (107-194)||(21017832-21017919)
chr3 (93-190)||(12573231-12573328)
chr3 (93-190)||(13549695-13549792)
chr3 (114-210)||(12409420-12409516)
chr3 (89-192)||(16970178-16970280)
chr3 (120-201)||(11521107-11521189)
chr3 (83-157)||(17637034-17637108)
chr3 (129-213)||(25883080-25883164)
chr3 (92-192)||(8402625-8402725)
chr3 (119-210)||(10341763-10341853)
chr3 (119-187)||(10303427-10303495)
chr3 (169-213)||(18065833-18065877)
[»] chr2 (13 HSPs)
chr2 (84-213)||(21505193-21505322)
chr2 (81-194)||(25473966-25474079)
chr2 (92-210)||(28278480-28278597)
chr2 (96-192)||(32619586-32619682)
chr2 (131-210)||(30998750-30998829)
chr2 (92-210)||(35707743-35707861)
chr2 (129-192)||(16593827-16593890)
chr2 (108-210)||(19949611-19949714)
chr2 (105-155)||(31914045-31914095)
chr2 (93-201)||(1733042-1733149)
chr2 (151-213)||(35031701-35031763)
chr2 (83-192)||(18236377-18236486)
chr2 (130-193)||(21844703-21844766)
[»] chr4 (17 HSPs)
chr4 (90-213)||(18897929-18898052)
chr4 (92-201)||(12111398-12111505)
chr4 (84-199)||(1676363-1676478)
chr4 (84-199)||(1682891-1683006)
chr4 (108-213)||(5906774-5906879)
chr4 (83-210)||(25315288-25315415)
chr4 (92-163)||(15192143-15192214)
chr4 (106-191)||(34864367-34864452)
chr4 (93-184)||(1696652-1696741)
chr4 (119-213)||(27302745-27302839)
chr4 (92-211)||(9783039-9783158)
chr4 (120-211)||(4953650-4953741)
chr4 (92-213)||(10320273-10320394)
chr4 (95-192)||(22119589-22119686)
chr4 (107-156)||(33518995-33519044)
chr4 (101-159)||(25050173-25050231)
chr4 (129-161)||(5125581-5125613)
[»] chr1 (17 HSPs)
chr1 (96-213)||(26657420-26657537)
chr1 (93-214)||(21451869-21451989)
chr1 (92-213)||(30675423-30675545)
chr1 (106-201)||(12810276-12810371)
chr1 (106-213)||(50047135-50047242)
chr1 (92-212)||(11770049-11770169)
chr1 (92-194)||(8247730-8247832)
chr1 (84-201)||(23223343-23223460)
chr1 (108-194)||(12423987-12424074)
chr1 (119-201)||(23519821-23519903)
chr1 (98-213)||(25266399-25266514)
chr1 (107-199)||(18301071-18301165)
chr1 (107-189)||(25730649-25730730)
chr1 (89-162)||(25777936-25778009)
chr1 (129-201)||(24903361-24903433)
chr1 (108-175)||(30781715-30781783)
chr1 (115-194)||(34381671-34381750)
[»] chr6 (11 HSPs)
chr6 (89-201)||(30355263-30355375)
chr6 (117-213)||(13759505-13759602)
chr6 (91-161)||(15576268-15576338)
chr6 (129-193)||(15574902-15574965)
chr6 (113-192)||(14924492-14924571)
chr6 (92-213)||(16527836-16527951)
chr6 (115-190)||(16387325-16387400)
chr6 (95-204)||(15998454-15998563)
chr6 (83-132)||(12974269-12974318)
chr6 (113-193)||(20495867-20495947)
chr6 (129-193)||(32930546-32930610)
[»] scaffold0282 (1 HSPs)
scaffold0282 (95-213)||(22599-22717)
[»] scaffold0188 (1 HSPs)
scaffold0188 (113-189)||(27032-27108)
[»] scaffold0002 (1 HSPs)
scaffold0002 (83-162)||(446936-447015)
[»] scaffold0386 (2 HSPs)
scaffold0386 (106-204)||(13134-13232)
scaffold0386 (95-214)||(8762-8881)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 91 - 213
Target Start/End: Complemental strand, 28901516 - 28901394
Alignment:
Q  91 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 190  Q
    |||||||||||||  |||||| |||||| |||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||    
T  28901516 ggagcatcatatgaaatttttggctatgcttttaatacttttctttgcatttgaatacaaataagttgagagatagaggagttgtcaatggtttgaggaa 28901417  T
Q  191 cataatgtattcttctcactcga 213  Q
    |||| |||||| || ||||||||    
T  28901416 catattgtattgttttcactcga 28901394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 24120174 - 24120280
Alignment:
Q  95 catcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacata 194  Q
    |||||||||  ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| || | |||||||||| ||||||||||| |||    
T  24120174 catcatatgatattttttgctatgtttttagtacttttctttgcatttgaagagaaataagatgagagttagaggagttgtcaacggtttgaggaatata 24120273  T
Q  195 atgtatt 201  Q
     ||||||    
T  24120274 ttgtatt 24120280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 12956451 - 12956550
Alignment:
Q  114 ctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 213  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||| ||| |||||| || ||||||||    
T  12956451 ctatgtttttagtacttttctttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaaatattgtattgttttcactcga 12956550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 14977280 - 14977173
Alignment:
Q  94 gcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacat 193  Q
    ||||||||||  ||||||  |||||||||||  |||||||||||||||| ||||||||||||||||||| || | |||||||||||||||||||||||||    
T  14977280 gcatcatatgatatttttaactatgtttttagcacttttctttgcattttaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacat 14977181  T
Q  194 aatgtatt 201  Q
    | ||||||    
T  14977180 attgtatt 14977173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 11310388 - 11310277
Alignment:
Q  83 ttgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggt 182  Q
    ||||| || ||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||| ||||||| ||||||||| || | |||||||||||    
T  11310388 ttgataacagagcatcatatgatattttttgctatgtttttagtacttatctttgcatttgaagaaaaataagttgagagatagaaaaattgtcaatggt 11310289  T
Q  183 ttgaggaacata 194  Q
    || || ||||||    
T  11310288 ttaagaaacata 11310277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 16052460 - 16052358
Alignment:
Q  84 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 183  Q
    |||| |||||||||||||||  |||||| |||||||||||| ||||||| ||||||||||| ||||||||| ||||||| || | |||||||||||||||    
T  16052460 tgatgacggagcatcatatgatatttttggctatgtttttagtacttttatttgcatttgaggacaaataaaatgagagttagaggagttgtcaatggtt 16052361  T
Q  184 tga 186  Q
    |||    
T  16052360 tga 16052358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 22894709 - 22894584
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatata----agagttgtcaatggtttgag 187  Q
    |||||||||||| ||||||| | |||||||||| |||||||||| |||||||||| |||||||| ||||||||| |      ||||||||||||||||||    
T  22894709 gagcatcatatgacatttttaggtatgtttttagtacttttcttcgcatttgaagccaaataagttgagagatagagaactaagttgtcaatggtttgag 22894610  T
Q  188 gaacataatgtattcttctcactcga 213  Q
    | ||||| |||||||||  |||||||    
T  22894609 gtacatattgtattctttacactcga 22894584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 201
Target Start/End: Original strand, 6358645 - 6358747
Alignment:
Q  99 atatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgt 198  Q
    ||||| ||||||  |||||||||||| ||||||| |||||||||||||||| ||||| ||||||||| | ||||||| ||||||||| | |||||| |||    
T  6358645 atatgacattttgggctatgtttttagtacttttatttgcatttgaagacatataagttgagagatagaggagttgttaatggtttgggaaacatattgt 6358744  T
Q  199 att 201  Q
    |||    
T  6358745 att 6358747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 16054234 - 16054355
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 190  Q
    |||||||||||| ||||||  ||||||| |||| ||||||| ||||||||||||||||||||||||| |||| || | |||||||||||| ||| |||||    
T  16054234 gagcatcatatgacattttg-gctatgtctttagtactttttctttgcatttgaagacaaataagataagagttagaggagttgtcaatgatttaaggaa 16054332  T
Q  191 cataatgtattcttctcactcga 213  Q
    |||  |||||| || ||||||||    
T  16054333 cattttgtattgttttcactcga 16054355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 28252557 - 28252468
Alignment:
Q  91 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatg 180  Q
    |||||||||||||  |||||||| |||||||||||||||||| || | |||| ||||||||||||||||||| || ||||| ||||||||    
T  28252557 ggagcatcatatgatattttttgttatgtttttaatacttttattcgtatttaaagacaaataagatgagagttagaagagatgtcaatg 28252468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 13082090 - 13082012
Alignment:
Q  115 tatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 192  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||| || | |||||||||||| |||||| ||||    
T  13082090 tatgtttttagtactttttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatgatttgagaaaca 13082012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 201
Target Start/End: Original strand, 32239241 - 32239336
Alignment:
Q  106 attttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 201  Q
    |||||| ||||||||||||  |||||||||| |||||||||| | ||||||| | |  || | ||||||||||||||||||| |||||| ||||||    
T  32239241 atttttggctatgtttttagcacttttctttacatttgaagatagataagataataattagaggagttgtcaatggtttgagtaacatattgtatt 32239336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 29047454 - 29047373
Alignment:
Q  129 ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 213  Q
    ||||||||||||||||| |||||||||||||||| || | ||||||||||||||   ||||||| | |||||| || ||||||||    
T  29047454 ttttctttgcatttgaaaacaaataagatgagagttagaggagttgtcaatggt---aggaacacattgtattgttttcactcga 29047373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 26882368 - 26882469
Alignment:
Q  113 gctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactc 211  Q
    |||||||||||| ||||||| ||| ||| | |||||||||||| ||||||  || | |||||| ||||||||| |||| ||||||||||| || ||||||    
T  26882368 gctatgtttttagtactttttcttcgcaatcgaagacaaataaaatgagatttaaaggagttgccaatggtttaaggagcataatgtattgttttcactc 26882467  T
Q  212 ga 213  Q
    ||    
T  26882468 ga 26882469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 5570279 - 5570195
Alignment:
Q  129 ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 213  Q
    |||| |||||||||||||| |||||||||||||  |  | |||||||||||  ||||||||||||| |||||| || ||||||||    
T  5570279 ttttttttgcatttgaagaaaaataagatgagatttgaaggagttgtcaatactttgaggaacatattgtattgttttcactcga 5570195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 28902056 - 28902138
Alignment:
Q  119 tttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 201  Q
    |||||| ||||||| |||||||||  || ||| |||||||| ||||| | ||||| | ||||||||||| |||||| ||||||    
T  28902056 tttttagtacttttatttgcatttataggcaagtaagatgatagatagaggagttattaatggtttgagaaacatattgtatt 28902138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 29291703 - 29291809
Alignment:
Q  84 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 183  Q
    |||||||||| |||||||||  |||||  |||||||||||  |  |||||||| ||||||||| ||||| ||| |  | ||| | ||||| |||||||||    
T  29291703 tgattacggaacatcatatgatattttaggctatgttttttgttattttcttttcatttgaaggcaaattagaagtcatatagaggagttatcaatggtt 29291802  T
Q  184 tgaggaa 190  Q
    |||||||    
T  29291803 tgaggaa 29291809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 30543717 - 30543763
Alignment:
Q  106 attttttgctatgtttttaatacttttctttgcatttgaagacaaat 152  Q
    |||||| |||||||||||| || |||| |||||||||||||||||||    
T  30543717 atttttagctatgtttttagtatttttttttgcatttgaagacaaat 30543763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 24841693 - 24841814
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    |||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||||| | ||||| |||||||||||||||||    
T  24841693 gagcatcatatgacattttttgctatgtttttagtactattctttgcatttgaagacaaataagtttagagatagaggagttttcaatggtttgaggaac 24841792  T
Q  192 ataatgtattcttctcactcga 213  Q
    ||| |||||| || ||||||||    
T  24841793 atattgtattgttttcactcga 24841814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 17382210 - 17382091
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    ||||||||||||  |||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||||||||||    
T  17382210 gagcatcatatgatattttttgctatgtgtttagtacttttttttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaac 17382111  T
Q  192 ataatgtattcttctcactc 211  Q
    ||| |||||| || ||||||    
T  17382110 atattgtattgttttcactc 17382091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 25594867 - 25594749
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    |||||||||||   |||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| || | || || |||||||||||||||||    
T  25594867 gagcatcatatattatttttggctatgtttttagtacttttatttgcatttgaagacaaataagatgagagttagaggatttctcaatggtttgaggaac 25594768  T
Q  192 ataatgtattcttctcact 210  Q
    ||| |||||| || |||||    
T  25594767 atattgtattgttttcact 25594749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 91 - 194
Target Start/End: Original strand, 17027466 - 17027569
Alignment:
Q  91 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 190  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||||||||| ||||||| ||||||||||| || | | || ||||| |||||||||||    
T  17027466 ggagcatcatatgacatttttggctatgtttttagtacttttctttgcatttaaagacaattaagatgagagttagaggcgtggtcaagggtttgaggaa 17027565  T
Q  191 cata 194  Q
    ||||    
T  17027566 cata 17027569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 12340187 - 12340087
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    |||||||||||| ||||||  |||||||||||| || ||||||||||||||||||||||||||| |||||| || | |||||||||||||||||||||||    
T  12340187 gagcatcatatgacattttg-gctatgtttttagta-ttttctttgcatttgaagacaaataaggtgagagttagaggagttgtcaatggtttgaggaac 12340090  T
Q  192 ata 194  Q
    |||    
T  12340089 ata 12340087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 24517317 - 24517403
Alignment:
Q  115 tatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 201  Q
    |||||||||| | |||| |||||||||||||||||||||||||||||  || | |||||||||||||||||||||||||| ||||||    
T  24517317 tatgtttttagttctttgctttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgtatt 24517403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 30072134 - 30072218
Alignment:
Q  108 tttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 192  Q
    |||| |||||||||| | |||||||||||| |||||||||||||||||||||||  || | ||||||||||||||||||||||||    
T  30072134 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaaca 30072218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 22229732 - 22229822
Alignment:
Q  75 cttgaatgttgattacggagcatcatatgccattttttgctatgtttttaa-tacttttctttgcatttgaagacaaataagatgagagata 165  Q
    |||| |||||||| || |||||||||||| ||||||  ||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  22229732 cttggatgttgatgacagagcatcatatgtcattttg-gctatgttttttagtacttttctttgcatttgaagacaaataagatgagagata 22229822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 91 - 187
Target Start/End: Complemental strand, 11274506 - 11274411
Alignment:
Q  91 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgag 187  Q
    |||||||||| ||  |||||||||||| |||||| ||||||||||||||||| ||||| |||||||| ||||||| |  ||||||||||||||||||    
T  11274506 ggagcatcatttgatattttttgctat-tttttagtacttttctttgcatttaaagaccaataagataagagatagatcagttgtcaatggtttgag 11274411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 106 - 201
Target Start/End: Original strand, 18222447 - 18222542
Alignment:
Q  106 attttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 201  Q
    |||||| ||||| |||||| || |||| |||  |||||||||||||||||||||||| || | ||||||||||||||||||| |||||| ||||||    
T  18222447 atttttagctatatttttagtatttttatttctatttgaagacaaataagatgagagttagatgagttgtcaatggtttgagaaacatattgtatt 18222542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 22968025 - 22967910
Alignment:
Q  84 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 183  Q
    |||| |||||| ||||||||  |||||  |||||||||||| || |||||||||||| | |||||||||||||||     || | ||||||| |||||||    
T  22968025 tgatgacggagtatcatatgatattttaggctatgtttttagtagttttctttgcatgttaagacaaataagatggattttagaggagttgtgaatggtt 22967926  T
Q  184 tgaggaacataatgta 199  Q
    ||||||||||| ||||    
T  22967925 tgaggaacatattgta 22967910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 193
Target Start/End: Complemental strand, 16622838 - 16622741
Alignment:
Q  95 catcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacat 193  Q
    |||||||||  | |||| |||||||||||| || |||| ||| |||||||||||||||| ||  |||| || | |||||||||||||||||||||||||    
T  16622838 catcatatgataattttagctatgtttttagtattttt-tttacatttgaagacaaatacgaaaagagttaaaggagttgtcaatggtttgaggaacat 16622741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 16634007 - 16634107
Alignment:
Q  114 ctatgtttttaatacttttctttg-catttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcg 212  Q
    ||||||||||| ||||||| |||  | ||| |||| |||||||||||||| |  | ||||||||||||||||||| |||||| |||||| || |||||||    
T  16634007 ctatgtttttagtactttttttttacgtttaaagaaaaataagatgagagttggatgagttgtcaatggtttgagaaacatattgtattgttttcactcg 16634106  T
Q  213 a 213  Q
    |    
T  16634107 a 16634107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 25680586 - 25680657
Alignment:
Q  142 tgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 213  Q
    |||||||||| |||||||||| |||  || || |||||||||||||||||||| |||||| || ||||||||    
T  25680586 tgaagacaaaaaagatgagagttattggatttttcaatggtttgaggaacatattgtattgttttcactcga 25680657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 213
Target Start/End: Original strand, 15205576 - 15205704
Alignment:
Q  83 ttgattacggagcatcatatgccattttttg-ctatgtttttaatacttttc-tttgcatttgaagacaaataagatgagagatataagagttgtcaatg 180  Q
    ||||| || ||||||||||||  || ||||| ||||||||||| || ||||  ||||||||| || ||||||||||||||   || | ||||||||| ||    
T  15205576 ttgatgacagagcatcatatg--atattttgactatgtttttagtattttttatttgcatttaaatacaaataagatgagt--taaaggagttgtcagtg 15205671  T
Q  181 gtttgaggaacataatgtattcttctcactcga 213  Q
    |||||||||||||| |||||| || ||||||||    
T  15205672 gtttgaggaacatattgtattgttttcactcga 15205704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 22754911 - 22754957
Alignment:
Q  115 tatgtttttaatacttttctttgcatttgaagacaaataagatgaga 161  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||||||    
T  22754911 tatgtttttagtacgtttctttgcatttaaagacaaataagatgaga 22754957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 25075396 - 25075328
Alignment:
Q  108 tttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtc 176  Q
    |||| |||||||||||| || ||||||||||| |||||||||||||| || |||| || | ||||||||    
T  25075396 ttttggctatgtttttagtaattttctttgcacttgaagacaaataatattagagttagaggagttgtc 25075328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 25133365 - 25133297
Alignment:
Q  108 tttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtc 176  Q
    |||| |||||||||||| || ||||||||||| |||||||||||||| || |||| || | ||||||||    
T  25133365 ttttggctatgtttttagtaattttctttgcacttgaagacaaataatattagagttagaggagttgtc 25133297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 26330209 - 26330125
Alignment:
Q  126 tacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcact 210  Q
    ||||||||||||||||  |||||||||||| ||||||||  |  ||||||||||||| | ||||| ||| |||||| || |||||    
T  26330209 tacttttctttgcattgtaagacaaataagttgagagatggagtagttgtcaatggtctaaggaatatattgtattgttttcact 26330125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 6137 - 6255
Alignment:
Q  93 agcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 192  Q
    ||||||||||| ||||||| |||||||||||| ||||||||||| ||||| || |||||||||||||||| |||| ||||| ||||||||||||||||||    
T  6137 agcatcatatggcatttttggctatgtttttagtacttttctttccatttaaacacaaataagatgagagttatatgagttttcaatggtttgaggaaca 6236  T
Q  193 taatgtattcttctcactc 211  Q
    ||||||||| || ||||||    
T  6237 taatgtattattttcactc 6255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 21336 - 21458
Alignment:
Q  91 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 190  Q
    |||||||||||||  |||||||  |||||||||| |  ||||||||||||||||||| |||||||||   || |||| ||| | | || |||||||||||    
T  21336 ggagcatcatatgatattttttattatgtttttagtgtttttctttgcatttgaagaaaaataagatttaagttatatgagatctaaagggtttgaggaa 21435  T
Q  191 cataatgtattcttctcactcga 213  Q
    | || |||||| || ||||||||    
T  21436 cttattgtattgttttcactcga 21458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 29544458 - 29544580
Alignment:
Q  91 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 190  Q
    |||||||||||||  |||||| |||||||||||| || |||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||    
T  29544458 ggagcatcatatgatatttttggctatgtttttattaattttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaa 29544557  T
Q  191 cataatgtattcttctcactcga 213  Q
    |||| |||||| || ||||||||    
T  29544558 catattgtattgttttcactcga 29544580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 7142038 - 7142140
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    |||||||||||| ||||||| ||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||| |||||||||||||||| ||||||    
T  7142038 gagcatcatatgacatttttggctatgtttttaatagttttctttgcatttaaagacaaataagttgagagagatatgagttgtcaatggtttaaggaac 7142137  T
Q  192 ata 194  Q
    |||    
T  7142138 ata 7142140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 22067980 - 22067860
Alignment:
Q  93 agcatcatatgccattttttgctatgtttttaatacttttc-tttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    ||||||||||| ||||||  |||||||||||| || ||||  ||||||||||||||||||||||||||||| || | |||||||||||||||||||||||    
T  22067980 agcatcatatgacattttg-gctatgtttttagtaatttttatttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaac 22067882  T
Q  192 ataatgtattcttctcactcga 213  Q
    |||||||||| || ||||||||    
T  22067881 ataatgtattgttttcactcga 22067860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 23124840 - 23124961
Alignment:
Q  91 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 190  Q
    |||||||||| || |||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||  || | ||||||| | |||| |||||||    
T  23124840 ggagcatcatctgacattttttactatgtttttagtacttt-ctttacatttgaagacaaataagatgagatttagaggagttgttagtggtctgaggaa 23124938  T
Q  191 cataatgtattcttctcactcga 213  Q
    |||| |||||| || ||||||||    
T  23124939 catattgtattgttttcactcga 23124961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 20446194 - 20446281
Alignment:
Q  108 tttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacata 194  Q
    |||| |||||||||||||||||||| |||||||||||||||||| ||||||||||  || | |||||||||||||||| || ||||||    
T  20446194 ttttagctatgtttttaatactttttctttgcatttgaagacaattaagatgagaattagaggagttgtcaatggtttcagaaacata 20446281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 7494651 - 7494753
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    |||||||| |||  |||||| |||||  ||||| |||||||||||||| ||||||||||| | | ||||||||| || |||||| |||||||||||||||    
T  7494651 gagcatcacatgatatttttggctattcttttagtacttttctttgcacttgaagacaaacaggttgagagataaaatagttgttaatggtttgaggaac 7494750  T
Q  192 ata 194  Q
    |||    
T  7494751 ata 7494753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 213
Target Start/End: Original strand, 9066063 - 9066193
Alignment:
Q  83 ttgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggt 182  Q
    ||||| ||| ||||| ||||| |||||||| |||| ||| || ||||||| || | ||||||||||||||||| ||| ||||| |  ||||||||||| |    
T  9066063 ttgatgacgaagcattatatgacattttttactatatttatagtacttttgttagaatttgaagacaaataagttgatagatagagaagttgtcaatgtt 9066162  T
Q  183 ttgaggaacataatgtattcttctcactcga 213  Q
    || ||||||||| |||||| || ||||||||    
T  9066163 tttaggaacatattgtattgttttcactcga 9066193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 7815285 - 7815383
Alignment:
Q  115 tatgtttttaatacttttct-ttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcg 212  Q
    |||||||||| ||||||| | ||||||||||||| |||||||||||||| || | || ||||||||||||| || |||||| |||||| || |||||||    
T  7815285 tatgtttttagtacttttttgttgcatttgaagataaataagatgagagttaaaggacttgtcaatggtttaagaaacatattgtatttttttcactcg 7815383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 194
Target Start/End: Complemental strand, 20470993 - 20470883
Alignment:
Q  84 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 183  Q
    |||| ||| |||||||||||   ||||| ||| |||||||| ||||||| |||  || |||||||||||||||||| |  || | |||||||||||||||    
T  20470993 tgatgacgaagcatcatatgaattttttggctttgtttttagtacttttatttatatgtgaagacaaataagatgataattagaggagttgtcaatggtt 20470894  T
Q  184 tgaggaacata 194  Q
    |||||||||||    
T  20470893 tgaggaacata 20470883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 315172 - 315246
Alignment:
Q  139 atttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 213  Q
    ||||||||| |||||||||||||| || | |||||||||||||||||| ||| ||| |||||| || ||||||||    
T  315172 atttgaagaaaaataagatgagagttagaggagttgtcaatggtttgaagaatatattgtattattgtcactcga 315246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 9385463 - 9385537
Alignment:
Q  127 acttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 201  Q
    ||||||| |||||||||||||||| ||||||||||||||   ||||||| |||||||||| |||| || ||||||    
T  9385463 acttttccttgcatttgaagacaattaagatgagagatagtggagttgttaatggtttgatgaacttattgtatt 9385537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 21471737 - 21471858
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 190  Q
    |||||||||||||||||||  | |||||||||| ||||||| | ||||||||||||||||||||||||| |  || | || ||||||||| ||| | |||    
T  21471737 gagcatcatatgccattttg-gttatgtttttagtactttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatgattttaagaa 21471835  T
Q  191 cataatgtattcttctcactcga 213  Q
    |||| | |||| || ||||||||    
T  21471836 catattatattgttttcactcga 21471858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 1255340 - 1255267
Alignment:
Q  140 tttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 213  Q
    |||||||||||||||| |||||| || | |||||||||||||||||||||| | | |||||| || ||||||||    
T  1255340 tttgaagacaaataagttgagagttagaggagttgtcaatggtttgaggaataaattgtattgttttcactcga 1255267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 213
Target Start/End: Complemental strand, 21545969 - 21545853
Alignment:
Q  96 atcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataa 195  Q
    ||||||||  ||||||  ||||||||||| ||||||||||| |  ||||||||||  ||||||| |  || |  |||||||||||||||||||||||||     
T  21545969 atcatatgatatttttgactatgtttttagtacttttcttttccattgaagacaac-aagatgataattaaataagttgtcaatggtttgaggaacatat 21545871  T
Q  196 tgtattcttctcactcga 213  Q
    |||||| || ||||||||    
T  21545870 tgtattgttttcactcga 21545853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 46054652 - 46054738
Alignment:
Q  106 attttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 192  Q
    ||||| |||||||||||||||  |||| |||| |||||||| |||||||||||  |  || | ||||||||| || |||||||||||    
T  46054652 attttatgctatgtttttaattattttttttgtatttgaaggcaaataagatgtcatttaaaggagttgtcattgatttgaggaaca 46054738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 2353418 - 2353357
Alignment:
Q  89 acggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaa 150  Q
    |||||||||| ||||  |||||  |||||||||||| |  ||||||||||||||||||||||    
T  2353418 acggagcatcgtatgatattttaggctatgtttttagttgttttctttgcatttgaagacaa 2353357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 4092603 - 4092671
Alignment:
Q  83 ttgattacggagcatcatatgccattttttgctatgtttttaatactttt-ctttgcatttgaagacaaa 151  Q
    ||||| || ||| |||||||| ||||||| ||||| |||||| ||||||| |||||||||||||||||||    
T  4092603 ttgatgacagagaatcatatgacattttt-gctatatttttagtactttttctttgcatttgaagacaaa 4092671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 19140153 - 19140085
Alignment:
Q  88 tacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataaga 156  Q
    |||||| ||||||||   |||||| |||||||||| | |  ||||||||||||||||||||||| ||||    
T  19140153 tacggaacatcatataatatttttggctatgttttaagttattttctttgcatttgaagacaaaaaaga 19140085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 20739552 - 20739484
Alignment:
Q  88 tacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataaga 156  Q
    |||||| ||||||||   |||||| |||||||||| | |  ||||||||||||||||||||||| ||||    
T  20739552 tacggaacatcatataatatttttggctatgttttaagttattttctttgcatttgaagacaaaaaaga 20739484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 33914737 - 33914628
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    |||||||| |||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||||    
T  33914737 gagcatcacatgccactttttactatgtttttagtacttttctttgcatttcaagacaaataagatgagagttataggagttgtcaacggtttgaggaac 33914638  T
Q  192 ataatgtatt 201  Q
    ||| ||||||    
T  33914637 atattgtatt 33914628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 13911197 - 13911307
Alignment:
Q  84 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 183  Q
    |||| |||||| |||| |||  ||||||| ||||||||||| || ||||||||| |||||||||||| ||||  |||||||| |||||||||||||||||    
T  13911197 tgatgacggagaatcaaatgatatttttttctatgtttttagtaattttctttgtatttgaagacaagtaagtagagagatagaagagttgtcaatggtt 13911296  T
Q  184 tgaggaacata 194  Q
    |||||||||||    
T  13911297 tgaggaacata 13911307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 25919640 - 25919537
Alignment:
Q  91 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 190  Q
    |||||||||||||  |||| | | |||||||||| ||| |||||||| |||||||||||||||||||||||| || | || |||||||||||||||||||    
T  25919640 ggagcatcatatgatatttctggttatgtttttagtacatttctttgaatttgaagacaaataagatgagagttagatgatttgtcaatggtttgaggaa 25919541  T
Q  191 cata 194  Q
    ||||    
T  25919540 cata 25919537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 1475454 - 1475334
Alignment:
Q  93 agcatcatatgccattttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    ||||||||||| ||||||  |||||||||||| ||||||| |||||||||||||| | ||||||||||||| || | ||||| ||||||||||||||||     
T  1475454 agcatcatatgacattttg-gctatgtttttagtactttttctttgcatttgaagtctaataagatgagagttagaggagttttcaatggtttgaggaat 1475356  T
Q  192 ataatgtattcttctcactcga 213  Q
    ||| |||||| || ||||||||    
T  1475355 atattgtattattttcactcga 1475334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 19219397 - 19219284
Alignment:
Q  81 tgttgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatg 180  Q
    ||||||| ||| |||||||||||  | |||| ||| |||||||| || |||||||||| |||||||| |||||||||||||| |||  ||||||||||||    
T  19219397 tgttgatgacgaagcatcatatgatacttttagctgtgtttttagtatttttctttgcttttgaagataaataagatgagagttattggagttgtcaatg 19219298  T
Q  181 gtttgaggaacata 194  Q
    ||||||||| ||||    
T  19219297 gtttgaggagcata 19219284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 21017832 - 21017919
Alignment:
Q  107 ttttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacata 194  Q
    ||||||| |||||||||| || ||||||||||||||||||| |||||||||||||| || | |||||| ||||  |||||||||||||    
T  21017832 ttttttgttatgtttttagtatttttctttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgaggaacata 21017919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 12573231 - 12573328
Alignment:
Q  93 agcatcatatgccattttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 190  Q
    ||||||||||| ||||||  | |||||||||| ||||||| ||||||||| |||||||||||||||||||| || | || |||||||||||||||||||    
T  12573231 agcatcatatgacattttg-gttatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttgaggaa 12573328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 13549695 - 13549792
Alignment:
Q  93 agcatcatatgccattttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 190  Q
    ||||||||||| ||||||  | |||||||||| ||||||| ||||||||| |||||||||||||||||||| || | || |||||||||||||||||||    
T  13549695 agcatcatatgacattttg-gttatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttgaggaa 13549792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 12409420 - 12409516
Alignment:
Q  114 ctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcact 210  Q
    |||| |||||| ||||||| |||| ||||||||| ||||||  || |||||| |||||||||||||||||||| ||||||| |||||| || |||||    
T  12409420 ctatatttttagtacttttatttgtatttgaagaaaaataacttgggagataaaagagttgtcaatggtttgaagaacatattgtattattttcact 12409516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 192
Target Start/End: Original strand, 16970178 - 16970280
Alignment:
Q  89 acggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgagg 188  Q
    |||||||| ||||||  ||||||  ||||||||||| | |||||||||| ||||||| ||||||||| |||||| |||| |||||||| |||||| ||||    
T  16970178 acggagca-catatgatatttttgactatgtttttagtgcttttctttgtatttgaacacaaataagttgagagttatatgagttgtcgatggttcgagg 16970276  T
Q  189 aaca 192  Q
    ||||    
T  16970277 aaca 16970280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 11521107 - 11521189
Alignment:
Q  120 ttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 201  Q
    ||||||||||||| | ||||||||||||| |||||||||||| | |  | |||||||||||||||||||||||||| ||||||    
T  11521107 ttttaatactttttcattgcatttgaagaaaaataagatgagcgttggaggagttgtcaatggtttgaggaacatattgtatt 11521189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 17637034 - 17637108
Alignment:
Q  83 ttgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagat 157  Q
    ||||| ||||||||||||||| ||||||| ||||||||| || |||||||||||| | || ||||||||||||||    
T  17637034 ttgatgacggagcatcatatgacatttttggctatgtttatattacttttctttgtaattaaagacaaataagat 17637108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 25883080 - 25883164
Alignment:
Q  129 ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 213  Q
    ||||| ||||||||||||| ||||||||||||||  | |||||||||||||  ||||||||||||| | |||| || ||||||||    
T  25883080 ttttcattgcatttgaagaaaaataagatgagagtcagaagagttgtcaattttttgaggaacatattatattgttttcactcga 25883164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 8402725 - 8402625
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    ||||||||||||  |||||   |||||||||||    ||| |||||||||||||| |||||||||||  |  || | |||||||||||||||||||||||    
T  8402725 gagcatcatatgatattttagactatgtttttatgtatttactttgcatttgaaggcaaataagatgtaatttagaggagttgtcaatggtttgaggaac 8402626  T
Q  192 a 192  Q
    |    
T  8402625 a 8402625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 10341763 - 10341853
Alignment:
Q  119 tttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcact 210  Q
    |||||| ||||||||| ||||||||||  ||||||||||| ||  || | ||||||||||||| |||||||||| | |||||| || |||||    
T  10341763 tttttagtacttttctctgcatttgaaatcaaataagatgtgaattagaggagttgtcaatgg-ttgaggaacaaattgtattgttttcact 10341853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 10303427 - 10303495
Alignment:
Q  119 tttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgag 187  Q
    |||||| ||||||||| | ||||||||  ||||||||||| ||  || | |||||||||||||||||||    
T  10303427 tttttagtacttttctctacatttgaaatcaaataagatgtgaattagaggagttgtcaatggtttgag 10303495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 18065833 - 18065877
Alignment:
Q  169 gagttgtcaatggtttgaggaacataatgtattcttctcactcga 213  Q
    ||||||||||||||||||| |||||| |||||| || ||||||||    
T  18065833 gagttgtcaatggtttgagaaacatattgtattgttttcactcga 18065877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 84 - 213
Target Start/End: Complemental strand, 21505322 - 21505193
Alignment:
Q  84 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 183  Q
    |||| |||||||||||||||  |||||| |||||||||||| || |||||||||||||||||||||||||||||||||| || |  ||||||||||||||    
T  21505322 tgatgacggagcatcatatgatatttttggctatgtttttagtatttttctttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtt 21505223  T
Q  184 tgaggaacataatgtattcttctcactcga 213  Q
    |||||| |||| |||||| || ||||||||    
T  21505222 tgaggagcatattgtattgttttcactcga 21505193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 25473966 - 25474079
Alignment:
Q  81 tgttgattacggagcatcatatgccattttttgctatgtttttaatac-ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaat 179  Q
    ||||||| || |||||||||||| ||||||  |||||||||||| ||| |||| ||| ||||||||||||||||||||||||| || | |||||||||||    
T  25473966 tgttgatgacagagcatcatatgacattttg-gctatgtttttagtacattttattttcatttgaagacaaataagatgagagttagaggagttgtcaat 25474064  T
Q  180 ggtttgaggaacata 194  Q
     ||||||||||||||    
T  25474065 tgtttgaggaacata 25474079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 28278597 - 28278480
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    ||||||||||||  ||||||||||||||||| | ||||||||||||||||||||| ||||||||| ||||| || | || || |||||||||||| ||||    
T  28278597 gagcatcatatgatattttttgctatgtttt-agtacttttctttgcatttgaaggcaaataagaagagagttagaggatttctcaatggtttgaagaac 28278499  T
Q  192 ataatgtattcttctcact 210  Q
    ||| |||||| || |||||    
T  28278498 atagtgtattattttcact 28278480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 32619586 - 32619682
Alignment:
Q  96 atcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 192  Q
    ||||||||  |||||| ||||| |||||| |||||||||||||||||||||||||||||  ||||||||| | ||||||| ||||||| ||||||||    
T  32619586 atcatatgatatttttggctatatttttagtacttttctttgcatttgaagacaaataacttgagagatagaggagttgttaatggttagaggaaca 32619682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 30998750 - 30998829
Alignment:
Q  131 ttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcact 210  Q
    |||||||| ||||||||||||||||||||||| || | |||||||||||||||||||||||||| |||||| || |||||    
T  30998750 ttctttgcctttgaagacaaataagatgagagttagatgagttgtcaatggtttgaggaacatattgtattgttttcact 30998829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 35707743 - 35707861
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 190  Q
    |||||||||||| ||||||   ||||||||||| ||||||| ||||| |||||||||||||||||||||||| || |  |||||||||||||||||| ||    
T  35707743 gagcatcatatgacattttga-ctatgtttttagtactttttctttgtatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 35707841  T
Q  191 cataatgtattcttctcact 210  Q
    |||  |||||| || |||||    
T  35707842 catgttgtattgttttcact 35707861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 16593890 - 16593827
Alignment:
Q  129 ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 192  Q
    |||| |||||||||||||||||||||||| |||| |||| |||||||||||||||||| |||||    
T  16593890 ttttttttgcatttgaagacaaataagattagagttataggagttgtcaatggtttgatgaaca 16593827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 19949714 - 19949611
Alignment:
Q  108 tttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttct 206  Q
    ||||| ||||||||||| ||||||| ||||| ||||||||| |||||| |||||||||  | ||||||| ||| |||||||||||||| |||||| || |    
T  19949714 ttttttctatgtttttagtactttttctttgtatttgaagataaataacatgagagattgaggagttgttaatagtttgaggaacatattgtattatttt 19949615  T
Q  207 cact 210  Q
    ||||    
T  19949614 cact 19949611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 31914095 - 31914045
Alignment:
Q  105 cattttttgctatgtttttaatacttttctttgcatttgaagacaaataag 155  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||    
T  31914095 cattttttgctatgtttttagtatttttctttgcatttgaagacaaataag 31914045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 201
Target Start/End: Original strand, 1733042 - 1733149
Alignment:
Q  93 agcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 192  Q
    ||||||||||| ||||||  | |||||||||| ||||||| ||| ||||||||||||||| ||||||||| || | ||||||||||||  ||||| ||||    
T  1733042 agcatcatatgacatttta-gttatgtttttagtactttttttttcatttgaagacaaatgagatgagagttagaggagttgtcaatgagttgagaaaca 1733140  T
Q  193 taatgtatt 201  Q
     | ||||||    
T  1733141 aattgtatt 1733149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 35031701 - 35031763
Alignment:
Q  151 ataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 213  Q
    ||||||||||||||| | ||||||| |||||||||||||||||| |||||| || ||||||||    
T  35031701 ataagatgagagatagaggagttgttaatggtttgaggaacatattgtattgttttcactcga 35031763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 18236486 - 18236377
Alignment:
Q  83 ttgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggt 182  Q
    ||||| |||||||||||||||  ||||| ||||||||||||| |  |||||||||||||||||| |||| ||  ||  |  ||||  |||||||||||||    
T  18236486 ttgatgacggagcatcatatgatattttatgctatgtttttagttattttctttgcatttgaaggcaaagaaattgtaatttatagaagttgtcaatggt 18236387  T
Q  183 ttgaggaaca 192  Q
    ||||| ||||    
T  18236386 ttgagaaaca 18236377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 21844766 - 21844703
Alignment:
Q  130 tttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacat 193  Q
    |||||||||||||||||||||||||| ||  |  || | |||||||||||||||| ||||||||    
T  21844766 tttctttgcatttgaagacaaataagttgtaatttagaggagttgtcaatggttttaggaacat 21844703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 18897929 - 18898052
Alignment:
Q  90 cggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgagga 189  Q
    |||| ||||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||||| ||||||||| | || ||||||||||||| ||||    
T  18897929 cggatcatcatatgacatttttggctgtgtttttactacttttctttgcatttgaagacaaataagttgagagatagatgatttgtcaatggtttaagga 18898028  T
Q  190 acataatgtattcttctcactcga 213  Q
    ||||| |||||| || ||||||||    
T  18898029 acatattgtattgttttcactcga 18898052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 12111505 - 12111398
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    |||||||||||| ||||||||| |||||||||| ||||||| |||||||||||||||||| ||||||||| ||| | |||||||||||||||||||||||    
T  12111505 gagcatcatatgacattttttgttatgtttttagtacttttatttgcatttgaagacaaa-aagatgaga-atagaggagttgtcaatggtttgaggaac 12111408  T
Q  192 ataatgtatt 201  Q
    ||| ||||||    
T  12111407 atattgtatt 12111398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 1676478 - 1676363
Alignment:
Q  84 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 183  Q
    |||| ||| ||||||||||| ||||||| | ||| |||||  ||||||||||| |||||||||||||||||||||| ||||| | |||||||||||||||    
T  1676478 tgatgacgaagcatcatatgacatttttggttatattttttgtacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtt 1676379  T
Q  184 tgaggaacataatgta 199  Q
    ||||||||||| ||||    
T  1676378 tgaggaacatattgta 1676363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 1683006 - 1682891
Alignment:
Q  84 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 183  Q
    |||| ||| ||||||||||| ||||||| | ||| |||||  ||||||||||| |||||||||||||||||||||| ||||| | |||||||||||||||    
T  1683006 tgatgacgaagcatcatatgacatttttggttatattttttgtacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtt 1682907  T
Q  184 tgaggaacataatgta 199  Q
    ||||||||||| ||||    
T  1682906 tgaggaacatattgta 1682891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 5906879 - 5906774
Alignment:
Q  108 tttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctc 207  Q
    ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| || | || ||||||||||||||||||||||| | |||| || ||    
T  5906879 tttttgctatgtttttagtacttttatttgcatttgaagacaaacaagatgagagttagaggaattgtcaatggtttgaggaacatattatattgttttc 5906780  T
Q  208 actcga 213  Q
    ||||||    
T  5906779 actcga 5906774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 25315415 - 25315288
Alignment:
Q  83 ttgattacggagcatcatatgccattttttgctatgtttttaa-tacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatgg 181  Q
    ||||| || |||||||||||| ||||||  | ||||||||| | ||||||||||| |||||||||| ||||||||||||||||| | ||||||||||||     
T  25315415 ttgatgaccgagcatcatatgacatttta-gttatgttttttagtacttttctttacatttgaagataaataagatgagagatagaggagttgtcaatgc 25315317  T
Q  182 tttgaggaacataatgtattcttctcact 210  Q
    ||||||||||||| |||||| || |||||    
T  25315316 tttgaggaacatattgtattgttttcact 25315288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 15192143 - 15192214
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagaga 163  Q
    |||||||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||    
T  15192143 gagcatcatatgacattttttgttatgtttttcgtacttttctttgcatttgaagacaaataagatgagaga 15192214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 34864452 - 34864367
Alignment:
Q  106 attttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    |||||||| |||||||||| |||||||||||| ||||||||||||||||||| | || || | |||||||||||||||||||||||    
T  34864452 attttttgttatgtttttagtacttttctttgtatttgaagacaaataagataaaagttagaggagttgtcaatggtttgaggaac 34864367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 1696741 - 1696652
Alignment:
Q  93 agcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggttt 184  Q
    ||||||||||| ||||||| ||||| |||  | ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  1696741 agcatcatatgacatttttggctatattt--agtacttttatttacatttgaagacaaataagatgagagatataggagttgtcaatggttt 1696652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 27302745 - 27302839
Alignment:
Q  119 tttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 213  Q
    ||||||||| ||||| ||||||||||||||||||| ||||| ||||| |  ||||||||||||||||||||||||  |||||| || ||||||||    
T  27302745 tttttaataattttcgttgcatttgaagacaaatatgatgatagatagagaagttgtcaatggtttgaggaacattttgtattgttttcactcga 27302839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 9783158 - 9783039
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 190  Q
    |||||||||||| ||||||   ||||||||||| ||||||| |||| ||||||||| ||||| ||||||||| || | ||||||||||| ||||||||||    
T  9783158 gagcatcatatgacattttgc-ctatgtttttagtactttttctttacatttgaaggcaaatgagatgagagttagaggagttgtcaatagtttgaggaa 9783060  T
Q  191 cataatgtattcttctcactc 211  Q
    |||| |||||| || ||||||    
T  9783059 catattgtattgttttcactc 9783039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 4953650 - 4953741
Alignment:
Q  120 ttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactc 211  Q
    ||||| || ||||||||| ||||||||| |||||||||| |||||| | ||||||| |||||||||||||||||| |||||| || ||||||    
T  4953650 ttttagtatttttctttgtatttgaagagaaataagatgtgagataaaggagttgttaatggtttgaggaacatattgtattgttttcactc 4953741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 10320394 - 10320273
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    |||||||||||| ||||||| |||||||||||| || |||||||| |||||||||| ||| ||| | || | || | ||||||| ||| ||| ||| |||    
T  10320394 gagcatcatatgacatttttcgctatgtttttagtaattttctttccatttgaagataaaaaagtttagcggtagacgagttgttaatagttagagaaac 10320295  T
Q  192 ataatgtattcttctcactcga 213  Q
    ||| ||||||||| ||||||||    
T  10320294 atattgtattcttttcactcga 10320273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 22119589 - 22119686
Alignment:
Q  95 catcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 192  Q
    |||||||||  ||||| ||||||||||||| |  |||||||||||||||||| ||||| ||| |  |  |||| ||||||||||||||||||||||||    
T  22119589 catcatatgatattttatgctatgtttttagttattttctttgcatttgaaggcaaattagaagttatttataggagttgtcaatggtttgaggaaca 22119686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 33518995 - 33519044
Alignment:
Q  107 ttttttgctatgtttttaatacttttctttgcatttgaagacaaataaga 156  Q
    ||||||||||||||||||||  |||||||||||||||||| |||||||||    
T  33518995 ttttttgctatgtttttaattattttctttgcatttgaaggcaaataaga 33519044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 25050231 - 25050173
Alignment:
Q  101 atgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatga 159  Q
    |||| |||||| |||||||||||| || |||| |||| |||||||||||||||||||||    
T  25050231 atgctatttttggctatgtttttagtatttttatttgtatttgaagacaaataagatga 25050173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 5125581 - 5125613
Alignment:
Q  129 ttttctttgcatttgaagacaaataagatgaga 161  Q
    |||| ||||||||||||||||||||||||||||    
T  5125581 ttttttttgcatttgaagacaaataagatgaga 5125613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 96 - 213
Target Start/End: Original strand, 26657420 - 26657537
Alignment:
Q  96 atcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataa 195  Q
    ||||||||  ||||||  ||||||||||| |||||||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||| ||||    
T  26657420 atcatatgatatttttgactatgtttttattacttttctttgcatttgaagacaaatatgttgagagatagaggagttgtcaatggtttgaggaatataa 26657519  T
Q  196 tgtattcttctcactcga 213  Q
    |||||| || ||||||||    
T  26657520 tgtattgttttcactcga 26657537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 21451989 - 21451869
Alignment:
Q  93 agcatcatatgccattttttgctatgtttttaatac-ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    ||||||||||| ||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||    
T  21451989 agcatcatatgacattttg-gctatgtttttagtacgttttctttgcatttgaagacaaataagatgagagatagaagagttgtcaatggtat-aggaac 21451892  T
Q  192 ataatgtattcttctcactcgac 214  Q
    ||| |||||| || |||||||||    
T  21451891 atattgtattattttcactcgac 21451869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 30675423 - 30675545
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatacttttctttg-catttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 190  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||  |||||| ||||||||||||||| |  || | ||||||||||||||||||||||    
T  30675423 gagcatcatatgacattttttgctatgtttttagaacttttctttttcatttgtagacaaataagatgaaaattagaggagttgtcaatggtttgaggaa 30675522  T
Q  191 cataatgtattcttctcactcga 213  Q
    |||| |||||| || ||||||||    
T  30675523 catattgtattgttttcactcga 30675545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 106 - 201
Target Start/End: Original strand, 12810276 - 12810371
Alignment:
Q  106 attttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 201  Q
    ||||||| ||||||||||| |||||||||||  |||| |||||||||||| ||||||||| | |||||||||||||||||||||||||| ||||||    
T  12810276 attttttactatgtttttagtacttttctttatatttaaagacaaataagttgagagatagaggagttgtcaatggtttgaggaacatattgtatt 12810371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 106 - 213
Target Start/End: Original strand, 50047135 - 50047242
Alignment:
Q  106 attttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttc 205  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |  || | |||||||||||| |||||| |||||| |||||| ||     
T  50047135 atttttggctatgtttttgatacttttctttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatgatttgagaaacatattgtattgttt 50047234  T
Q  206 tcactcga 213  Q
    ||||||||    
T  50047235 tcactcga 50047242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 11770169 - 11770049
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    |||||||| |||  ||||||  |||||||||||||||| ||||||||||||||||| |||||||||||||| || |  | ||||||||||||| ||||||    
T  11770169 gagcatcacatgatatttttgtctatgtttttaatactattctttgcatttgaagataaataagatgagagttagagaatttgtcaatggtttaaggaac 11770070  T
Q  192 ataatgtattcttctcactcg 212  Q
    ||| |||||| || |||||||    
T  11770069 atattgtattgttttcactcg 11770049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 8247832 - 8247730
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatac-ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 190  Q
    |||||||||||| ||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||| || | ||| | ||||||||||||||||    
T  8247832 gagcatcatatgacattttga-ctatgtttttaataccttttctttgcatttgaagacaaataagatgagagttagaggagatatcaatggtttgaggaa 8247734  T
Q  191 cata 194  Q
    ||||    
T  8247733 cata 8247730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 23223343 - 23223460
Alignment:
Q  84 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 183  Q
    |||| |||||||||||||||   ||||| |||||||||| | |||||||||||||||||  |||||| ||||||| ||| || | |||||||||||||||    
T  23223343 tgatgacggagcatcatatgatgtttttggctatgttttaagtacttttctttgcattttgagacaattaagatgggagttagaggagttgtcaatggtt 23223442  T
Q  184 tgaggaacataatgtatt 201  Q
    ||||||||| | ||||||    
T  23223443 tgaggaacacattgtatt 23223460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 12424074 - 12423987
Alignment:
Q  108 tttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacata 194  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| | | | ||||| ||||||||||||||||||    
T  12424074 ttttggctatgtttttagtactttttctttgcatttgaagacaaataagatgagagacagaggcgttgttaatggtttgaggaacata 12423987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 23519903 - 23519821
Alignment:
Q  119 tttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 201  Q
    |||||| ||||||||||||| |||||||||||||| ||||||||||| || |||||| ||| |||||||||||||| ||||||    
T  23519903 tttttagtacttttctttgcttttgaagacaaatatgatgagagatagaaaagttgttaatagtttgaggaacatattgtatt 23519821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 25266514 - 25266399
Alignment:
Q  98 catatgccattttttgct-atgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataat 196  Q
    |||||| ||||||||| | ||||||||| |||||||||||||||||||||||| | ||||| ||||||| |  ||||||||||||| |||  |||||| |    
T  25266514 catatgacattttttggttatgtttttagtacttttctttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatatt 25266416  T
Q  197 gtattcttctcactcga 213  Q
    ||||| || ||||||||    
T  25266415 gtattgttttcactcga 25266399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 18301165 - 18301071
Alignment:
Q  107 ttttttgctatgtttttaatacttttctttgcatttgaagacaa--ataagatgagagatataagagttgtcaatggtttgaggaacataatgta 199  Q
    ||||| |||||||||||  |||||||||||||||||||||||||  | || ||||||| |||| | |||||||||||||||||||| ||| ||||    
T  18301165 tttttagctatgtttttggtacttttctttgcatttgaagacaaacaaaaaatgagagttataggggttgtcaatggtttgaggaatatattgta 18301071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 25730730 - 25730649
Alignment:
Q  107 ttttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgagga 189  Q
    |||||||||||||||| | |||||||||||||||||||| |||||||||||||||| || | | | ||||||||| |||||||    
T  25730730 ttttttgctatgtttt-agtacttttctttgcatttgaaaacaaataagatgagagttagagggggtgtcaatggcttgagga 25730649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 25778009 - 25777936
Alignment:
Q  89 acggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagag 162  Q
    |||||| ||||||||  ||||||||||||||| ||| | |||||||||||||||||| | ||||||||||||||    
T  25778009 acggagtatcatatgatattttttgctatgttcttagtgcttttctttgcatttgaaaataaataagatgagag 25777936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 24903433 - 24903361
Alignment:
Q  129 ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 201  Q
    ||||||||||||||||||||||||| |||||||  ||   |||||||||||| ||||||||||||| ||||||    
T  24903433 ttttctttgcatttgaagacaaatatgatgagaattagtggagttgtcaatgatttgaggaacatattgtatt 24903361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 30781715 - 30781783
Alignment:
Q  108 tttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgt 175  Q
    ||||||||||||||||| || |||| |||||||||||||||||||||||||||||| || | |||||||    
T  30781715 tttttgctatgtttttagtaatttttctttgcatttgaagacaaataagatgagagttagaggagttgt 30781783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 34381671 - 34381750
Alignment:
Q  115 tatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacata 194  Q
    |||||||||| || |||| ||||||||||||| |||||||||||  |  || | ||||||| |||||||||| |||||||    
T  34381671 tatgtttttattagttttatttgcatttgaaggcaaataagatgtaatttagaggagttgttaatggtttgaagaacata 34381750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 89 - 201
Target Start/End: Original strand, 30355263 - 30355375
Alignment:
Q  89 acggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgagg 188  Q
    |||||||||||||||  |||||| |||||||||||| |||||||  ||||||||||||  |||||||||||||| || |  |||||||||||||||||      
T  30355263 acggagcatcatatgatatttttggctatgtttttagtacttttacttgcatttgaaggtaaataagatgagagttagagaagttgtcaatggtttgata 30355362  T
Q  189 aacataatgtatt 201  Q
    |||||| ||||||    
T  30355363 aacatattgtatt 30355375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 13759602 - 13759505
Alignment:
Q  117 tgtttttaatacttttc-tttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 213  Q
    ||||||||||||||||  |||| ||||||||| |||||||||||||| || | |||||||||||||||||||||||||| || ||| || ||||||||    
T  13759602 tgtttttaatactttttatttgtatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaacatattgaattgttttcactcga 13759505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 15576338 - 15576268
Alignment:
Q  91 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgaga 161  Q
    |||||||||||||  |||||| |||||||||||| |||||||||||| |||| |||||||||| |||||||    
T  15576338 ggagcatcatatgatatttttggctatgtttttagtacttttctttgaatttaaagacaaataggatgaga 15576268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 15574902 - 15574965
Alignment:
Q  129 ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacat 193  Q
    |||||||||||||||||||||||||||||||||  || | || |||||||| |||||||||||||    
T  15574902 ttttctttgcatttgaagacaaataagatgagatttagaggaattgtcaat-gtttgaggaacat 15574965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 14924571 - 14924492
Alignment:
Q  113 gctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 192  Q
    |||||||||||| |  |||||||||||||||||| ||||||| |||  |  || | ||||||||||||||||||||||||    
T  14924571 gctatgtttttagttattttctttgcatttgaaggcaaataatatgtaatttagaggagttgtcaatggtttgaggaaca 14924492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 16527836 - 16527951
Alignment:
Q  92 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 191  Q
    |||||||||||   |||||| |||||||||||| ||||||||||||      ||||||||||||||||||| || | ||||||||  ||||||||| | |    
T  16527836 gagcatcatataatatttttggctatgtttttagtacttttctttg------aagacaaataagatgagagttagaggagttgtcggtggtttgagtacc 16527929  T
Q  192 ataatgtattcttctcactcga 213  Q
    ||| | |||| || ||||||||    
T  16527930 atattatattgttttcactcga 16527951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 16387400 - 16387325
Alignment:
Q  115 tatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 190  Q
    |||||||||| || |||||||||  ||||||||| |||||||||  |  || | ||||||||||||||||||||||    
T  16387400 tatgtttttagtagttttctttgtgtttgaagacgaataagatgtaatttagatgagttgtcaatggtttgaggaa 16387325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 204
Target Start/End: Original strand, 15998454 - 15998563
Alignment:
Q  95 catcatatgccattttttgctatgtttttaatac-ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacat 193  Q
    ||||||||| ||||||  |||||||||||  ||| ||||||||||||||||||  |||| | ||||||| || | ||||  || ||||||||||||| ||    
T  15998454 catcatatgacattttg-gctatgttttttgtacgttttctttgcatttgaaggaaaatgatatgagagttagaggagtgttccatggtttgaggaaaat 15998552  T
Q  194 aatgtattctt 204  Q
    | |||||||||    
T  15998553 attgtattctt 15998563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 12974269 - 12974318
Alignment:
Q  83 ttgattacggagcatcatatgccattttttgctatgtttttaatactttt 132  Q
    ||||| |||||||||||||||  ||||||||||||| ||||| |||||||    
T  12974269 ttgatgacggagcatcatatgatattttttgctatggttttagtactttt 12974318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 20495947 - 20495867
Alignment:
Q  113 gctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacat 193  Q
    |||||||||||| || ||||||||| |||||||| ||| ||||| |  | ||| |  |||| |||||||||||||||||||    
T  20495947 gctatgtttttagtaattttctttgtatttgaaggcaattaagaggtcatatagagaagttatcaatggtttgaggaacat 20495867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 32930610 - 32930546
Alignment:
Q  129 ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacat 193  Q
    |||| ||||||||||||| |||||||||||  |  || | ||||||||||||||||| |||||||    
T  32930610 ttttttttgcatttgaaggcaaataagatgtcatttagaggagttgtcaatggtttgcggaacat 32930546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 22717 - 22599
Alignment:
Q  95 catcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacata 194  Q
    |||||||| |||||||| |||||||||||  ||||||| |||||||||||||||||| |||    |||||| ||||||||| ||| ||||||| ||||||    
T  22717 catcatataccatttttggctatgttttttgtacttttatttgcatttgaagacaaacaagtgtggagataaaagagttgttaattgtttgagtaacata 22618  T
Q  195 atgtattcttctcactcga 213  Q
     |||||| || ||||||||    
T  22617 ttgtattgttttcactcga 22599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 27108 - 27032
Alignment:
Q  113 gctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgagga 189  Q
    |||||||||||| |||||||||||||||||||||| |||||||||   || || |||||||||| |||| |||||||    
T  27108 gctatgtttttagtacttttctttgcatttgaagataaataagatagaagttacaagagttgtctatggattgagga 27032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 446936 - 447015
Alignment:
Q  83 ttgattacggagcatcatatgccattttttgctatgtttttaatacttttc-tttgcatttgaagacaaataagatgagag 162  Q
    ||||| || ||||||||||||  |||||| |||||||||||| |||||||| ||| |||||||||||||||||||||||||    
T  446936 ttgatgacagagcatcatatgatattttt-gctatgtttttagtacttttcctttacatttgaagacaaataagatgagag 447015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 204
Target Start/End: Complemental strand, 13232 - 13134
Alignment:
Q  106 attttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattctt 204  Q
    |||||| | |||||||||| ||||||| ||| ||| | ||||||||||||||||||| || | || || ||||||||||| |||  ||| |||||||||    
T  13232 atttttagttatgtttttagtacttttattttcatattaagacaaataagatgagagttagaggatttttcaatggtttgtggattatattgtattctt 13134  T

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Target: scaffold0386; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 8881 - 8762
Alignment:
Q  95 catcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacata 194  Q
    |||||||||  |||||| | ||| |||||| ||||||| ||| ||||| |||| |||||||||||| | || | || |||||||||||| |||||   ||    
T  8881 catcatatgatatttttggttatttttttagtacttttattttcattttaagaaaaataagatgagggttagaggatttgtcaatggttagaggattgta 8782  T
Q  195 atgtattcttctcactcgac 214  Q
     |||||| || |||||||||    
T  8781 ttgtattgttttcactcgac 8762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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