View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_95 (Length: 212)
Name: NF17452_low_95
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_95 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 28912 - 29092
Alignment:
| Q |
14 |
attatactcaaacaaacgacatatgcaagaaattttctttttcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattgtaaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28912 |
attatactcaaacaaacgacatatgcaagaaattttctctttcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattgtaaaa |
29011 |
T |
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| Q |
114 |
gaggtgagctgactatcttcattccttttcttgagatgacatccagataatcccataatttcaacttggaactttttgaat |
194 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29012 |
gaggtgagctgactatcttcattccttttcttgacatgacatccagataatcccataatttcaacttggaactttttgaat |
29092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 276022 - 276202
Alignment:
| Q |
14 |
attatactcaaacaaacgacatatgcaagaaattttctttttcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattgtaaaa |
113 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
276022 |
attatactcaaacaaacaacatatgcaagaaattttctctttcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattgtaaaa |
276121 |
T |
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| Q |
114 |
gaggtgagctgactatcttcattccttttcttgagatgacatccagataatcccataatttcaacttggaactttttgaat |
194 |
Q |
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| T |
276122 |
gaggtgagctgactatcttcattccttttcttaagatgacatccagataatcccataatttcaacttggaactttttgaat |
276202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 26396627 - 26396807
Alignment:
| Q |
14 |
attatactcaaacaaacgacatatgcaagaaattttctttttcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattgtaaaa |
113 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396627 |
attatactcaaacaaacaacatatgcaagaaattttctctttcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattgtaaaa |
26396726 |
T |
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| Q |
114 |
gaggtgagctgactatcttcattccttttcttgagatgacatccagataatcccataatttcaacttggaactttttgaat |
194 |
Q |
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| T |
26396727 |
gaggtgagctgactatcttcattccttttcttaagatgacatccagataatcccataatttcaacttggaactttttgaat |
26396807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 85
Target Start/End: Original strand, 19216995 - 19217023
Alignment:
| Q |
57 |
gatgcatcccactctacaacaaattcttc |
85 |
Q |
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| T |
19216995 |
gatgcatcccactctacaacaaattcttc |
19217023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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