View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17453_high_10 (Length: 336)
Name: NF17453_high_10
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_high_10 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 44991364 - 44991029
Alignment:
| Q |
1 |
aaacccattaaaggttctccatatccaaggtacacatataacttcaataaaatttaatttgatactaagctagcttctccccgaaagtcttgacactacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44991364 |
aaacccattaaaggttctccatatccaaggtacacatataacttcaataaaatataatttgatactacgctagcttctccccgaaagtcttgacactacg |
44991265 |
T |
|
| Q |
101 |
tcttcaccaaaaattttaaaacatcgattactataacaaattcatttcagctttaagtgttattgaaccatcaatttctcaggaaatactaacaacctta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44991264 |
tcttcaccaaaaattttaaaacatcgattactataacaaattcatttcagctttaagtgctattgaaccatcaatttctcaggaaatactaacaacctta |
44991165 |
T |
|
| Q |
201 |
taaattgttgttgtattattaggaactactacagatgtagcagttccaaaggttgtaccgcgcgaaagcaagttgaaaggagcaacactgaagcagacat |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44991164 |
taatttgttgttgtattattaggaactactacagatgtagcagttccaaaggttgtaccgcgcgaaagcaagttgaaaggagcaacactgaagcagacat |
44991065 |
T |
|
| Q |
301 |
gttcactgtgacctacacaggagatcataaccatgc |
336 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44991064 |
gttcactgtgacatacacaggagatcataaccatgc |
44991029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University