View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17453_high_13 (Length: 330)

Name: NF17453_high_13
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17453_high_13
NF17453_high_13
[»] chr7 (18 HSPs)
chr7 (5-198)||(10691108-10691297)
chr7 (190-330)||(10691704-10691848)
chr7 (23-92)||(11081529-11081599)
chr7 (6-82)||(13290682-13290757)
chr7 (101-208)||(26210630-26210737)
chr7 (17-92)||(45366544-45366619)
chr7 (16-92)||(6067404-6067481)
chr7 (101-143)||(6048960-6049002)
chr7 (16-92)||(44016864-44016942)
chr7 (14-75)||(2120798-2120861)
chr7 (101-143)||(12310173-12310215)
chr7 (16-92)||(21369543-21369621)
chr7 (16-92)||(25351255-25351332)
chr7 (16-92)||(25356949-25357026)
chr7 (13-58)||(30246869-30246915)
chr7 (16-92)||(44010953-44011031)
chr7 (23-82)||(6048892-6048952)
chr7 (36-92)||(6332256-6332312)
[»] chr8 (15 HSPs)
chr8 (8-209)||(13985172-13985372)
chr8 (13-209)||(33839015-33839210)
chr8 (5-135)||(13985978-13986110)
chr8 (16-92)||(2267226-2267304)
chr8 (6-226)||(17847571-17847783)
chr8 (16-92)||(30423113-30423191)
chr8 (16-92)||(33032556-33032633)
chr8 (8-58)||(23179798-23179849)
chr8 (15-92)||(26268433-26268511)
chr8 (23-81)||(31573934-31573993)
chr8 (150-213)||(33020992-33021055)
chr8 (57-143)||(11701114-11701199)
chr8 (102-143)||(25684626-25684668)
chr8 (13-57)||(21033769-21033814)
chr8 (171-227)||(31035322-31035376)
[»] chr1 (15 HSPs)
chr1 (26-210)||(14352970-14353153)
chr1 (14-209)||(13785364-13785560)
chr1 (3-80)||(32261025-32261103)
chr1 (23-143)||(49959049-49959170)
chr1 (41-133)||(8213696-8213788)
chr1 (15-92)||(28279269-28279347)
chr1 (27-143)||(37990682-37990798)
chr1 (23-82)||(26332770-26332829)
chr1 (13-91)||(46783042-46783121)
chr1 (16-92)||(3091309-3091387)
chr1 (101-211)||(30738723-30738831)
chr1 (23-87)||(27916507-27916572)
chr1 (16-92)||(4144886-4144963)
chr1 (13-58)||(21353583-21353629)
chr1 (166-227)||(13125536-13125596)
[»] chr6 (18 HSPs)
chr6 (23-209)||(17904442-17904630)
chr6 (14-227)||(7542459-7542669)
chr6 (5-92)||(24542877-24542964)
chr6 (26-143)||(3833315-3833432)
chr6 (23-92)||(22858151-22858221)
chr6 (25-92)||(20526855-20526923)
chr6 (5-87)||(7293828-7293910)
chr6 (13-58)||(13467700-13467746)
chr6 (16-92)||(19702065-19702143)
chr6 (13-58)||(22343038-22343084)
chr6 (13-58)||(22352089-22352135)
chr6 (41-82)||(4595057-4595098)
chr6 (23-89)||(17012087-17012155)
chr6 (290-323)||(17933419-17933452)
chr6 (170-227)||(25078634-25078690)
chr6 (23-88)||(25078758-25078823)
chr6 (126-227)||(28037806-28037905)
chr6 (21-92)||(30445560-30445632)
[»] chr2 (20 HSPs)
chr2 (29-210)||(43482946-43483128)
chr2 (14-198)||(26345573-26345757)
chr2 (15-92)||(30261976-30262053)
chr2 (15-142)||(10942671-10942799)
chr2 (15-142)||(10948540-10948668)
chr2 (15-142)||(30720771-30720899)
chr2 (7-209)||(41303125-41303329)
chr2 (23-204)||(34575207-34575389)
chr2 (90-211)||(17921742-17921863)
chr2 (45-135)||(7502918-7503008)
chr2 (6-92)||(33603887-33603973)
chr2 (16-184)||(27248018-27248189)
chr2 (23-92)||(43139363-43139433)
chr2 (6-92)||(41304590-41304678)
chr2 (64-227)||(15693921-15694083)
chr2 (5-52)||(45157003-45157050)
chr2 (14-92)||(35028554-35028633)
chr2 (13-58)||(37170989-37171035)
chr2 (5-82)||(39287177-39287255)
chr2 (122-227)||(27136201-27136304)
[»] scaffold0008 (1 HSPs)
scaffold0008 (7-213)||(57518-57727)
[»] chr3 (15 HSPs)
chr3 (5-184)||(11066553-11066734)
chr3 (6-209)||(23941721-23941930)
chr3 (13-92)||(15823813-15823892)
chr3 (5-113)||(11072909-11073018)
chr3 (7-82)||(27703383-27703459)
chr3 (23-92)||(13419872-13419942)
chr3 (13-92)||(26762938-26763017)
chr3 (150-213)||(42297751-42297814)
chr3 (23-82)||(561981-562042)
chr3 (23-92)||(46966851-46966921)
chr3 (16-87)||(3329794-3329867)
chr3 (16-92)||(13893363-13893440)
chr3 (17-92)||(27762189-27762265)
chr3 (12-87)||(16996773-16996849)
chr3 (137-228)||(46966724-46966813)
[»] chr4 (15 HSPs)
chr4 (4-92)||(32274105-32274193)
chr4 (6-227)||(54906620-54906845)
chr4 (26-184)||(5516362-5516521)
chr4 (6-227)||(3982253-3982467)
chr4 (23-92)||(10112934-10113004)
chr4 (16-92)||(47566394-47566472)
chr4 (6-92)||(26557631-26557717)
chr4 (23-92)||(52043580-52043650)
chr4 (15-92)||(36769379-36769458)
chr4 (23-92)||(36771304-36771375)
chr4 (23-81)||(9863772-9863832)
chr4 (16-82)||(4558212-4558280)
chr4 (172-227)||(25357844-25357898)
chr4 (16-92)||(16638728-16638806)
chr4 (15-87)||(4874687-4874760)
[»] chr5 (20 HSPs)
chr5 (6-179)||(13294675-13294850)
chr5 (23-143)||(35430179-35430300)
chr5 (101-184)||(34033686-34033769)
chr5 (101-227)||(2144639-2144764)
chr5 (8-98)||(13295734-13295825)
chr5 (5-105)||(5777788-5777890)
chr5 (16-92)||(26406676-26406753)
chr5 (5-209)||(32520421-32520625)
chr5 (23-92)||(4754166-4754236)
chr5 (162-227)||(15143605-15143669)
chr5 (13-92)||(40222662-40222742)
chr5 (16-143)||(16093448-16093571)
chr5 (16-92)||(31782660-31782738)
chr5 (13-58)||(42238202-42238248)
chr5 (13-57)||(1240327-1240372)
chr5 (16-92)||(25838009-25838086)
chr5 (15-91)||(35314702-35314779)
chr5 (102-143)||(36402485-36402525)
chr5 (171-227)||(17413243-17413298)
chr5 (23-78)||(29748359-29748415)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 10691108 - 10691297
Alignment:
Q  5 gagagagaagaaaaacatggtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattg 104  Q
    ||||||| | ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||     ||||||||| |||||||||||    
T  10691108 gagagagcacaaaaacagggtttagaagccaacaacaaactagggtttgtaaagttttatcttgtctacaaacag----gttgagattgaatcaacattg 10691203  T
Q  105 attcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattctt 198  Q
    |||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10691204 attcaccttgaataaacactattaagattgaatctcttgttcaccgaaaaagattcaggattttgagtagaattaggtttcaacacttattctt 10691297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 10691704 - 10691848
Alignment:
Q  190 cttattcttttaaccctttgatatatctctttgtaaagattggacgttgattgatcggatgacacttgtaaaacacaacacatcatgcatgacgacattg 289  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||      
T  10691704 cttattcttctaaccctttgatatttctctttgtaaagattggacgttgattgttcggaagacacttgtaaaacacaatacatcatgcatgacgacatcc 10691803  T
Q  290 c----taacagagagattggacagagagatgaatttgattaacat 330  Q
    |    ||||  ||||||| ||| |||||||||||| |||||||||    
T  10691804 caacataactaagagattagacggagagatgaattcgattaacat 10691848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 11081529 - 11081599
Alignment:
Q  23 ggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    ||||||||||||||||||||| |||||||||||||||  || ||||| ||||||||||||| |||||||||    
T  11081529 ggtttagaagccaacaacaaaactagggtttgtagagaattctcttggcaacaaacactagggttgagatt 11081599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 13290757 - 13290682
Alignment:
Q  6 agagagaagaaaaacatggtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactag 82  Q
    |||||| ||||||||| || ||| || | |||||||||||||||||||||||||||| ||||| |||||||||||||    
T  13290757 agagagtagaaaaacaggggttataa-caaacaacaaactagggtttgtagagttttctcttggcaacaaacactag 13290682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 26210630 - 26210737
Alignment:
Q  101 attgattcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattctttt 200  Q
    |||||||||||||| | |||||||||||||||||| ||||||| |  | |||| |||||| ||| |||  ||||||||| |||| || ||| |||||| |    
T  26210630 attgattcaccttggagaaatactattaggattgagtctcttggtaacggaaagagattcgggactttcggtagaattaggtttgaagactgattcttgt 26210729  T
Q  201 aacccttt 208  Q
    ||||||||    
T  26210730 aacccttt 26210737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 45366544 - 45366619
Alignment:
Q  17 aaacatggtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    ||||| |||||||||| |||||||||||||| |||| ||||||||| | ||| ||||||||||||| |||| ||||    
T  45366544 aaacaaggtttagaagtcaacaacaaactagagtttatagagttttcttttggcaacaaacactagggttgtgatt 45366619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 6067481 - 6067404
Alignment:
Q  16 aaaacatggtttagaagccaac-aacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||||||||||||||||||| ||||||||||||||| |||||  || |||||  |||||||||||| |||| ||||    
T  6067481 aaaacatggtttagaagccaacaaacaaactagggtttatagagaattctcttggtaacaaacactagggttgggatt 6067404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 6048960 - 6049002
Alignment:
Q  101 attgattcaccttgaataaatactattaggattgaatctcttg 143  Q
    |||||||||||||||| ||| ||||||||||||||||||||||    
T  6048960 attgattcaccttgaagaaacactattaggattgaatctcttg 6049002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 44016942 - 44016864
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| |||||||||||||||| |||||||||||||| |||||  ||| ||||| ||||||||||||| |||| ||||    
T  44016942 aaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaaacactagggttgggatt 44016864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 2120798 - 2120861
Alignment:
Q  14 gaaaaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaa 75  Q
    |||||||| |||||||||||||||| |||||||||||||| ||||| |||| ||||| ||||||    
T  2120798 gaaaaacaaggtttagaagccaacatacaaactagggtttatagagattttctcttggcaacaa 2120861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 12310215 - 12310173
Alignment:
Q  101 attgattcaccttgaataaatactattaggattgaatctcttg 143  Q
    |||||||||||||||| ||| |||||||||||||| |||||||    
T  12310215 attgattcaccttgaacaaacactattaggattgagtctcttg 12310173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 21369543 - 21369621
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| |||||||||||||||| |||||||||||||| |||||   || ||||| ||||||||| ||| |||||||||    
T  21369543 aaaacagggtttagaagccaacatacaaactagggtttatagagaaattctcttggcaacaaacattagggttgagatt 21369621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 25351255 - 25351332
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| |||||||||||||||| |||||||||||||| |||||  ||| ||||| |||| |||||||| |||||||||    
T  25351255 aaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgagatt 25351332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 25356949 - 25357026
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| |||||||||||||||| |||||||||||||| |||||  ||| ||||| |||| |||||||| |||||||||    
T  25356949 aaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgagatt 25357026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 30246869 - 30246915
Alignment:
Q  13 agaaaaacatggtttagaagccaacaac-aaactagggtttgtagag 58  Q
    ||||||||| |||||||||||||||||| |||||||||||| |||||    
T  30246869 agaaaaacagggtttagaagccaacaacaaaactagggtttatagag 30246915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 44011031 - 44010953
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| |||||||||||||||| |||||||| ||||| |||||  ||| ||||| ||||||||||||| |||| ||||    
T  44011031 aaaacagggtttagaagccaacatacaaactatggtttatagagaatttttcttggcaacaaacactagggttgggatt 44010953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 6048892 - 6048952
Alignment:
Q  23 ggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactag 82  Q
    |||||||||||||||| |||| |||||||||||| ||  || ||||| |||||||||||||    
T  6048892 ggtttagaagccaacatcaaaactagggtttgtaaagaattctcttggcaacaaacactag 6048952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 6332256 - 6332312
Alignment:
Q  36 acaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| |||||||||| ||||||||  ||||| |||||||||||||  ||||||||    
T  6332256 acaacagactagggtttatagagtttactcttggcaacaaacactaggattgagatt 6332312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 13985372 - 13985172
Alignment:
Q  8 agagaagaaaaacatggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgat 106  Q
    |||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||| | |||  || ||||| || ||||| |||||||||| |||||||    
T  13985372 agagtagaaaaacaaggtttagaagccaacaacaaaactagagtttgtagagtttttt-ttggaaataaacattatagttgggattaaatcaccattgat 13985274  T
Q  107 tcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccct 206  Q
    |||||||||| ||| |||||||||||||| ||||||| || | | || |||||| ||| |||| ||||||||| |||| || ||| |||||| |||||||    
T  13985273 tcaccttgaaaaaacactattaggattgagtctcttggtcacaggaagagattcgggactttgggtagaattaggtttgaa-actgattcttgtaaccct 13985175  T
Q  207 ttg 209  Q
    |||    
T  13985174 ttg 13985172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 33839210 - 33839015
Alignment:
Q  13 agaaaaacatggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcacc 111  Q
    ||||||||| || ||| ||||||| || ||| ||||| |||||| |||||| ||||| ||||||||||||| ||||| ||| ||||| ||||||||||||    
T  33839210 agaaaaacaaggattataagccaagaataaaactaggatttgtaaagttttctcttggcaacaaacactagggttgaaattgaatcaccattgattcacc 33839111  T
Q  112 ttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttg 209  Q
    ||||| ||| |||||||||||||| ||||||| |  | | || ||||||| || |||| ||||||||| |||| || ||| |||||| ||||||||||    
T  33839110 ttgaagaaacactattaggattgagtctcttggt--caggaagagattcaagactttgggtagaattaggtttgaagactaattcttgtaaccctttg 33839015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 13986110 - 13985978
Alignment:
Q  5 gagagagaagaaaaacatgg-tttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacat 102  Q
    ||||||| ||||||||| || |||||||| |||||||||| ||||  ||||||||||||| |||||  |||||||| |||  ||| |||| ||||| |||    
T  13986110 gagagagtagaaaaacaagggtttagaagtcaacaacaaaactagaatttgtagagttttctcttggaaacaaacattaggattgggattgaatcaccat 13986011  T
Q  103 tgattcaccttgaataaatactattaggattga 135  Q
    |||||||||||| | ||| ||||||||||||||    
T  13986010 tgattcaccttggagaaacactattaggattga 13985978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 2267304 - 2267226
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagatt 92  Q
    ||||||||||||||||||||||| |||||||||||||| |||||  ||| ||||| ||||||||||||  |||||||||    
T  2267304 aaaacatggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaaacactacggttgagatt 2267226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 17847571 - 17847783
Alignment:
Q  6 agagagaagaaaaacatggtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattga 105  Q
    |||||| ||||||||| |||||||||   |||||||||||| ||||| ||||| ||| ||| | ||||||||||||  |||| ||||         ||||    
T  17847571 agagagtagaaaaacaaggtttagaaatgaacaacaaactaaggtttatagagatttctctaggcaacaaacactatggttgggatt------gttttga 17847664  T
Q  106 ttcaccttgaa-taaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaacc 204  Q
    |||||||||||  ||| |||||||||||||||||||||| || | | || ||||| | || |||| ||||||||| |||| || ||| |||||| ||| |    
T  17847665 ttcaccttgaacgaaacactattaggattgaatctcttgatcacgggaagagattga-gactttgggtagaattaggtttgaagactaattcttgtaa-c 17847762  T
Q  205 ctttgatatatctctttgtaaa 226  Q
    ||||||||| ||| ||||||||    
T  17847763 ctttgatatctct-tttgtaaa 17847783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 30423113 - 30423191
Alignment:
Q  16 aaaacatggtttagaagccaac-aacaaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||  ||| ||||| ||||||||||||| | |||||||    
T  30423113 aaaacagggtttagaagccaacaaacaaactagggtttatagagaatttctcttggcaacaaacactagggctgagatt 30423191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 33032556 - 33032633
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagatt 92  Q
    ||||||||||||||||||||||| |||||||||||||| |||||  ||| ||||| |||| |||||||| |||||||||    
T  33032556 aaaacatggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgagatt 33032633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 23179849 - 23179798
Alignment:
Q  8 agagaagaaaaacatggtttagaagccaaca-acaaactagggtttgtagag 58  Q
    |||| ||||||||| |||||||||||||||| |||||||||||||| |||||    
T  23179849 agagtagaaaaacagggtttagaagccaacatacaaactagggtttatagag 23179798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 26268511 - 26268433
Alignment:
Q  15 aaaaacatggtttagaagccaaca-acaaactagggtttgtagagt-tttatcttgtcaacaaacactagagttgagatt 92  Q
    ||||||| |||||||||||| ||| |||||||||||||| |||||  ||| ||||| |||||| ||||||||||||||||    
T  26268511 aaaaacaaggtttagaagcctacatacaaactagggtttatagagaatttctcttggcaacaa-cactagagttgagatt 26268433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 31573993 - 31573934
Alignment:
Q  23 ggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacacta 81  Q
    ||||||||||||||||  ||| ||||| ||||||||||||| ||||| ||||||||||||    
T  31573993 ggtttagaagccaacacgaaaactaggatttgtagagttttctcttggcaacaaacacta 31573934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 33021055 - 33020992
Alignment:
Q  150 gaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttgatat 213  Q
    |||| |||||| |||||||| ||||||||| |||| || ||| |||||| ||||||||||||||    
T  33021055 gaaatagattcgggattttgtgtagaattaggtttgaagactgattcttgtaaccctttgatat 33020992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 11701199 - 11701114
Alignment:
Q  57 agttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatactattaggattgaatctcttg 143  Q
    |||||| ||||| ||| |||||| || |||| |||| ||||| ||||||||||||||||| ||| | |||||| ||||| |||||||    
T  11701199 agttttctcttggcaataaacaccagggttg-gattgaatcaccattgattcaccttgaagaaacattattagaattgagtctcttg 11701114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 25684626 - 25684668
Alignment:
Q  102 ttgattcaccttgaataaat-actattaggattgaatctcttg 143  Q
    ||||||||||||||| |||| ||||||||||||||||||||||    
T  25684626 ttgattcaccttgaacaaatcactattaggattgaatctcttg 25684668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 21033769 - 21033814
Alignment:
Q  13 agaaaaacatggtttagaagccaaca-acaaactagggtttgtaga 57  Q
    ||||||||| |||||||||||||||| |||||||||||||| ||||    
T  21033769 agaaaaacagggtttagaagccaacatacaaactagggtttataga 21033814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 31035322 - 31035376
Alignment:
Q  171 gtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaag 227  Q
    ||||||||| |||| || |||||||||| ||||||||||  ||||||||||||||||    
T  31035322 gtagaattaggtttgaagacttattcttgtaaccctttg--atatctctttgtaaag 31035376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 210
Target Start/End: Original strand, 14352970 - 14353153
Alignment:
Q  26 ttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatact 124  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||| |||||||||||||  |||||||| ||||| ||||||||||||||| | ||| |||    
T  14352970 ttagaagccaacaacaaaactagggtttgtagagatttctcttggcaacaaacactaggtttgagattgaatcaccattgattcaccttggagaaacact 14353069  T
Q  125 attaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttga 210  Q
    ||||||||| | ||||||| || | |||| ||||||  || |||| ||||||||| |||| || || ||||||| |||||||||||    
T  14353070 attaggatttagtctcttggtcacggaaagagattcgagactttgggtagaattaggtttgaa-ac-tattcttgtaaccctttga 14353153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 13785560 - 13785364
Alignment:
Q  14 gaaaaacatggtttagaagccaacaaca-aactagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcacct 112  Q
    |||||||| || ||||||| || ||||| ||||||||||||||||| ||| ||||| |||||||||||||  ||||||   ||||    |||||||||||    
T  13785560 gaaaaacaaggattagaagtcagcaacataactagggtttgtagagatttctcttggcaacaaacactaggattgagaacgaatccctcttgattcacct 13785461  T
Q  113 tgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttg 209  Q
    | || ||| || ||||||||||| | ||||| || |  ||| |||||| ||| |||| ||||||||| |||| || ||| |||||| ||||||||||    
T  13785460 taaacaaacacaattaggattgagtttcttggtcacaaaaagagattcgggactttgggtagaattaggtttgaagactgattcttataaccctttg 13785364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 32261025 - 32261103
Alignment:
Q  3 tcgagagagaagaaaaacatggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacact 80  Q
    ||||||||| ||||||  | ||||||||||||||||||||| ||| ||||||||||||||| ||||| |||||||||||    
T  32261025 tcgagagagtagaaaacaagggtttagaagccaacaacaaaactaaggtttgtagagttttctcttgacaacaaacact 32261103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 49959049 - 49959170
Alignment:
Q  23 ggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaat 121  Q
    ||||||||||||||||||||| ||| |||||||||||  |  ||||| ||||||||| ||| ||||  ||| |||||  |||||||||||||| | |||     
T  49959049 ggtttagaagccaacaacaaaactatggtttgtagagaatcctcttggcaacaaacattagggttggaattgaatcactattgattcaccttggagaaac 49959148  T
Q  122 actattaggattgaatctcttg 143  Q
    |||||||||| ||| |||||||    
T  49959149 actattaggaatgagtctcttg 49959170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 8213788 - 8213696
Alignment:
Q  41 aaactagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatactattaggatt 133  Q
    |||||| | |||||||||  || ||||| ||||||||||||| ||||||||| ||||| ||||||||||||||  | ||| ||||||||||||    
T  8213788 aaactaagatttgtagagaattctcttgacaacaaacactagtgttgagattgaatcaccattgattcaccttagacaaacactattaggatt 8213696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 28279269 - 28279347
Alignment:
Q  15 aaaaacatggtttagaagccaacaacaaact-agggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||| ||||||||||||||||| |||||| | ||||||||||||||||  ||||| ||||||||||||| |||| ||||    
T  28279269 aaaatcatggtttagaagccaataacaaaattagggtttgtagagtttgctcttgacaacaaacactagggttgggatt 28279347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 37990682 - 37990798
Alignment:
Q  27 tagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatacta 125  Q
    ||||||||||||||||| ||||| ||||||||| ||| ||| | ||||||||||||| |||| |||| ||||| |||| ||| || ||| | ||| ||||    
T  37990682 tagaagccaacaacaaaactaggatttgtagagatttctctcggcaacaaacactagggttg-gattgaatcaccattaatttactttggagaaacacta 37990780  T
Q  126 ttaggattgaatctcttg 143  Q
    |||| ||||| |||||||    
T  37990781 ttagaattgagtctcttg 37990798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 26332829 - 26332770
Alignment:
Q  23 ggtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactag 82  Q
    ||||||||||||||||  ||| |||||||||||||||||  ||||| |||||||||||||    
T  26332829 ggtttagaagccaacacaaaaatagggtttgtagagtttgctcttggcaacaaacactag 26332770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 46783042 - 46783121
Alignment:
Q  13 agaaaaacatggtttagaagccaacaa-caaactagggtttgtagagttttatcttgtcaacaaacactagagttgagat 91  Q
    ||||||| | ||||||||||||||||| ||||||| ||||| |||||  |||||||  ||||||||||||| ||||||||    
T  46783042 agaaaaatagggtttagaagccaacaaacaaactatggtttatagagaattatctttgcaacaaacactagggttgagat 46783121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 3091387 - 3091309
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| |||||||||||||||| |||||||||||||| |||||  ||| |||||  |||||||||||| |||||||||    
T  3091387 aaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggtaacaaacactagggttgagatt 3091309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 30738831 - 30738723
Alignment:
Q  101 attgattcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattctttt 200  Q
    |||||||||||||| | ||| |||||||||||||| ||||||| ||   | || |||||  |||||||| ||||||||| |||| || |||||||||| |    
T  30738831 attgattcaccttgga-aaacactattaggattgagtctcttggtcataggaagagattg-ggattttgggtagaattaggtttgaagacttattcttgt 30738734  T
Q  201 aaccctttgat 211  Q
    |||||||||||    
T  30738733 aaccctttgat 30738723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 27916507 - 27916572
Alignment:
Q  23 ggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttg 87  Q
    ||||||||||||| ||| ||| ||||||||||||||||||  ||||| ||||||||||||| ||||    
T  27916507 ggtttagaagccagcaagaaaactagggtttgtagagtttgctcttggcaacaaacactagggttg 27916572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 4144963 - 4144886
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| |||||||||||||||| |||||||||||||| |||||  ||| ||||| ||| ||||||||| |||||||||    
T  4144963 aaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaa-aaacactagggttgagatt 4144886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 21353629 - 21353583
Alignment:
Q  13 agaaaaacatggtttagaagccaaca-acaaactagggtttgtagag 58  Q
    ||||||||| |||||||||||||||| |||||||||||||| |||||    
T  21353629 agaaaaacagggtttagaagccaacatacaaactagggtttatagag 21353583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 13125596 - 13125536
Alignment:
Q  166 tttgagtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaag 227  Q
    |||| ||||||||| |||| || |||||||||| |||||||||||||| ||| |||||||||    
T  13125596 tttgggtagaattaggtttgaagacttattcttgtaaccctttgatatctct-tttgtaaag 13125536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 17904630 - 17904442
Alignment:
Q  23 ggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatca-acattgattcaccttgaataaa 120  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||  ||||||||||||  |||| |||| ||||| |  ||| ||||||||||| | |    
T  17904630 ggtttagaagccaacaacaaaactagggtttgtagagttttctctttgcaacaaacactaaggttgggattgaatcacaatttggttcaccttgaacaca 17904531  T
Q  121 tactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttg 209  Q
     |||||||||| ||||||||||| ||   | || ||||| |||||||||  |||||||| |||| |||||| |||||| ||||||||||    
T  17904530 cactattaggactgaatctcttggtcatgggaagagatttaggattttggctagaattaggtttaaacactgattcttgtaaccctttg 17904442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 7542669 - 7542459
Alignment:
Q  14 gaaaaacatggtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcacctt 113  Q
    |||||||| ||  ||||||||||||| ||| ||||||||||| ||  || ||||| ||||||||||||| |||| |||| |||||  ||||||||| |||    
T  7542669 gaaaaacaaggaatagaagccaacaataaaatagggtttgtaaagaattctcttggcaacaaacactagggttgggattgaatcacaattgattca-ctt 7542571  T
Q  114 gaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttgatat 213  Q
    | | ||| ||||||| |||||| ||||||| || | | || |||||  ||| ||||  |||||||| |||| || ||| ||| || ||||||||||  ||    
T  7542570 ggagaaacactattatgattgagtctcttggtcacgggaagagatttgggaatttggatagaattaggtttgaagactaatttttgtaaccctttg--at 7542473  T
Q  214 atctctttgtaaag 227  Q
    ||||||||||||||    
T  7542472 atctctttgtaaag 7542459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 24542964 - 24542877
Alignment:
Q  5 gagagagaagaaaaacatggtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    ||||||| ||||||| | |||||||||||||||| ||||||| ||||| ||||| ||| ||||| ||||||||||||| |||| ||||    
T  24542964 gagagagcagaaaaataaggtttagaagccaacaccaaactatggtttatagagatttctcttggcaacaaacactagggttgggatt 24542877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 3833315 - 3833432
Alignment:
Q  26 ttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatact 124  Q
    |||||||||||||| ||| |||| ||||||| ||  || ||||| ||||||||| ||| |||| |||| ||||| ||||||||||||||||||||| |||    
T  3833315 ttagaagccaacaagaaaactagagtttgtaaagaattctcttg-caacaaacattagggttgggattgaatcaccattgattcaccttgaataaagact 3833413  T
Q  125 attaggattgaatctcttg 143  Q
    | || ||| || |||||||    
T  3833414 actatgatcgagtctcttg 3833432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 22858221 - 22858151
Alignment:
Q  23 ggtttagaagccaaca-acaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    ||||||||||| |||| | ||||||||||||||||| |||| |||||  |||||||||||| |||||||||    
T  22858221 ggtttagaagctaacacaaaaactagggtttgtagaattttctcttggtaacaaacactagggttgagatt 22858151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 20526855 - 20526923
Alignment:
Q  25 tttagaagccaaca-acaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    ||||||| |||||| | ||||||||| |||||||||||  ||||| ||||||||||||| |||||||||    
T  20526855 tttagaaaccaacacaaaaactaggggttgtagagtttgctcttgacaacaaacactagggttgagatt 20526923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 7293828 - 7293910
Alignment:
Q  5 gagagagaagaaaaacatggtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttg 87  Q
    ||||||| ||||||| | |||||| |||| |||||||||||||||||  ||||| ||| |||||  || ||||||||| ||||    
T  7293828 gagagagtagaaaaatagggtttaaaagcaaacaacaaactagggttcatagagatttctcttggtaagaaacactagggttg 7293910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 13467746 - 13467700
Alignment:
Q  13 agaaaaacatggtttagaagccaaca-acaaactagggtttgtagag 58  Q
    ||||||||| |||||||||||||||| |||||||||||||| |||||    
T  13467746 agaaaaacagggtttagaagccaacatacaaactagggtttatagag 13467700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 19702143 - 19702065
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| |||||||||||||||| ||||||||| |||| |||||  ||| ||||| ||||||||||||| |||| ||||    
T  19702143 aaaacaaggtttagaagccaacatacaaactagcgtttatagagaatttctcttggcaacaaacactagggttgggatt 19702065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 22343084 - 22343038
Alignment:
Q  13 agaaaaacatggtttagaagccaaca-acaaactagggtttgtagag 58  Q
    ||||||||| |||||||||||||||| |||||||||||||| |||||    
T  22343084 agaaaaacagggtttagaagccaacatacaaactagggtttatagag 22343038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 22352135 - 22352089
Alignment:
Q  13 agaaaaacatggtttagaagccaaca-acaaactagggtttgtagag 58  Q
    ||||||||| |||||||||||||||| |||||||||||||| |||||    
T  22352135 agaaaaacagggtttagaagccaacatacaaactagggtttatagag 22352089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 4595057 - 4595098
Alignment:
Q  41 aaactagggtttgtagagttttatcttgtcaacaaacactag 82  Q
    ||||||||||||||||||||||  |||| |||||||||||||    
T  4595057 aaactagggtttgtagagttttcacttggcaacaaacactag 4595098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 17012087 - 17012155
Alignment:
Q  23 ggtttagaagccaacaacaaactagggtttg--tagagttttatcttgtcaacaaacactagagttgag 89  Q
    ||||||||||  |||||||||||||||||||  || |||||  ||||| ||||||||||||| ||||||    
T  17012087 ggtttagaagtaaacaacaaactagggtttgtataaagtttgctcttggcaacaaacactagggttgag 17012155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 17933452 - 17933419
Alignment:
Q  290 ctaacagagagattggacagagagatgaatttga 323  Q
    |||||||||||||||||||||| |||||||||||    
T  17933452 ctaacagagagattggacagagggatgaatttga 17933419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 25078690 - 25078634
Alignment:
Q  170 agtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaag 227  Q
    |||||||||| |||| || |||||||||| |||||||||||||| ||| |||||||||    
T  25078690 agtagaattaggtttgaagacttattcttgtaaccctttgatatctct-tttgtaaag 25078634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 25078823 - 25078758
Alignment:
Q  23 ggtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttga 88  Q
    ||||||||| |  ||||||| ||||||||||||||||||  ||||| ||||||||| ||| |||||    
T  25078823 ggtttagaaacatacaacaatctagggtttgtagagtttactcttggcaacaaacattagggttga 25078758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 28037905 - 28037806
Alignment:
Q  126 ttaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaa 225  Q
    |||||||||| || ||||||| | |||| ||||| || | |||| ||||||||| |||| ||  ||||||||| |||||||||||||| ||| |||||||    
T  28037905 ttaggattgagtcccttgttcacggaaatagattgag-actttgggtagaattaggtttaaaatcttattcttgtaaccctttgatatctct-tttgtaa 28037808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 30445560 - 30445632
Alignment:
Q  21 atggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    ||||||||||||||||||  ||| ||||||||||||||   || ||||| ||||||||||||  |||||||||    
T  30445560 atggtttagaagccaacattaaaactagggtttgtagataattctcttggcaacaaacactacggttgagatt 30445632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 43483128 - 43482946
Alignment:
Q  29 gaagccaacaacaaact-agggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatactatt 127  Q
    ||||||||||| ||| | |||||||||||||||||||||| |||||||||| ||| |||| |||| ||| | ||||| ||||||||||| ||| |  |||    
T  43483128 gaagccaacaataaaattagggtttgtagagttttatcttatcaacaaacattagggttgggattgaattatcattgtttcaccttgaacaaacaacatt 43483029  T
Q  128 aggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttga 210  Q
    ||||||||| |||||| || |||||| ||||||| || ||||  |||| |||||||| || | | |||||| |||||||||||    
T  43483028 aggattgaaactcttggtcaccgaaagagattcatgactttggatagatttaagtttgaagagtgattcttgtaaccctttga 43482946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 26345573 - 26345757
Alignment:
Q  14 gaaaaacatggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcacct 112  Q
    |||||||| || |||||||||||||||||| ||||| ||||||||| ||| |||||  |||||||| ||| ||||||||| || || | |||||||||||    
T  26345573 gaaaaacaaggattagaagccaacaacaaaactaggatttgtagagatttctcttggtaacaaacattagggttgagattgaaacaccgttgattcacct 26345672  T
Q  113 tgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattctt 198  Q
    | |  ||| |||||||||||||| ||||||| || | |||| ||||||  || |||| |||||||||||||| || ||| ||||||    
T  26345673 t-agcaaacactattaggattgagtctcttggtcacggaaagagattcgagactttgggtagaattaagtttgaagactgattctt 26345757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 30262053 - 30261976
Alignment:
Q  15 aaaaacatggtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| ||| ||||||||| |||||||||    
T  30262053 aaaaacatggtttagaagccaacaacaaactacggtttatagagttttctcttggcaataaacactagggttgagatt 30261976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 10942799 - 10942671
Alignment:
Q  15 aaaaacatggtttagaagccaacaacaa-actagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcacctt 113  Q
    ||||||| || |||||||||||||| || ||||||| ||||||||  || ||||| ||||||||||||| |||| || | ||| | ||||| ||||||||    
T  10942799 aaaaacaaggattagaagccaacaataatactagggattgtagagaattctcttggcaacaaacactagggttgtgaatgaattatcattgtttcacctt 10942700  T
Q  114 gaataaatactattaggattgaatctctt 142  Q
    ||| ||| |||||||||||||| ||||||    
T  10942699 gaagaaacactattaggattgagtctctt 10942671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 10948668 - 10948540
Alignment:
Q  15 aaaaacatggtttagaagccaacaacaa-actagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcacctt 113  Q
    ||||||| || |||||||||||||| || ||||||| ||||||||  || ||||| ||||||||||||| |||| || | ||| | ||||| ||||||||    
T  10948668 aaaaacaaggattagaagccaacaataatactagggattgtagagaattctcttggcaacaaacactagggttgtgaatgaattatcattgtttcacctt 10948569  T
Q  114 gaataaatactattaggattgaatctctt 142  Q
    ||| ||| |||||||||||||| ||||||    
T  10948568 gaagaaacactattaggattgagtctctt 10948540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 30720899 - 30720771
Alignment:
Q  15 aaaaacatggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcacctt 113  Q
    |||||||||| ||| |||||||||  ||| |||||||||||||||  || ||||| || |||||||||| ||||||||| |||||  ||||||||| |||    
T  30720899 aaaaacatggattataagccaacactaaaactagggtttgtagagaattctcttggcaccaaacactagggttgagattgaatcactattgattcatctt 30720800  T
Q  114 gaataaatactattaggattgaatctctt 142  Q
    | | ||| |||||||||||||| ||||||    
T  30720799 ggagaaacactattaggattgagtctctt 30720771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 41303329 - 41303125
Alignment:
Q  7 gagagaagaaaaacatgg-tttagaagccaacaacaaac-tagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattg 104  Q
    ||||| ||||||||| || |||||||||||||||||||  ||| ||||||||||||||  |||| |||||||||||| ||||| |||| ||||  |||||    
T  41303329 gagagtagaaaaacaagggtttagaagccaacaacaaagatagagtttgtagagtttttacttggcaacaaacactaaagttgggattgaatcgccattg 41303230  T
Q  105 attcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaacc 204  Q
     || |||||| | ||| | |||||||||| | ||||||| || | | || |||||| ||| |||| ||||||||| |||| || ||| |||| | |||||    
T  41303229 ttttaccttggagaaaaattattaggattaagtctcttggtcacaggaagagattcgggactttgggtagaattatgtttgaagactgattcatgtaacc 41303130  T
Q  205 ctttg 209  Q
     ||||    
T  41303129 ttttg 41303125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 34575389 - 34575207
Alignment:
Q  23 ggtttagaagccaacaacaaa-ctagggtttgtagagtttta-tcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaa 120  Q
    ||||||||||||||||  ||| || ||| ||||||||||||  ||||| ||||||||| ||| ||||||||| ||| | ||||||||||||||| | |||    
T  34575389 ggtttagaagccaacactaaaacttgggattgtagagtttttctcttggcaacaaacattagggttgagattgaataatcattgattcaccttggagaaa 34575290  T
Q  121 tactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaacc 204  Q
     ||||||||||| || ||||||| ||  ||  |||||||| ||| |||| ||||||||| |||| || ||| |||||| |||||    
T  34575289 cactattaggatggagtctcttggtc-tcgggaaagattcgggactttgggtagaattaggtttgaagactaattcttataacc 34575207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 211
Target Start/End: Original strand, 17921742 - 17921863
Alignment:
Q  90 attaaatcaacattgattcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaaca 189  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||| |  | | || |||||| ||| |||| ||||||||| |||| || |    
T  17921742 attaaatcatcattgattcaccttgaagaaacactattaggattgagtctcttggttacaggaagagattcgggactttgggtagaattaggttttaaaa 17921841  T
Q  190 cttattcttttaaccctttgat 211  Q
    || ||||||  |||||||||||    
T  17921842 ctgattcttgcaaccctttgat 17921863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 7502918 - 7503008
Alignment:
Q  45 tagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatactattaggattga 135  Q
    ||||||||||||||  || ||||| ||||||||||||| |||| |||| ||||| ||||||| ||||||| | ||| ||||||||||||||    
T  7502918 tagggtttgtagagaattctcttgacaacaaacactagggttgggattgaatcaccattgatccaccttggagaaacactattaggattga 7503008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 33603887 - 33603973
Alignment:
Q  6 agagagaagaaaaacatggtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| ||||||||||||||||||| | |||||||||||||||||| ||||| ||| | ||| ||||||||| ||| |||| ||||    
T  33603887 agagagtagaaaaacatggtttagaaacaaacaacaaactagggtttatagagatttcttttggcaacaaacattagggttgggatt 33603973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 27248189 - 27248018
Alignment:
Q  16 aaaacatggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttg 114  Q
    |||||| || |||||||||||||||||| ||| ||||||||||   || ||||| ||||||||||||  | ||||||| ||||| ||||||||||| |||    
T  27248189 aaaacaaggattagaagccaacaacaaagctaaggtttgtagataattctcttggcaacaaacactacgggtgagattgaatcaccattgattcactttg 27248090  T
Q  115 aataaatactat--taggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagttt 184  Q
     | ||| | |||  ||||||||| ||||||| || | | || |||| ||||| |||| ||||||||| ||||    
T  27248089 gagaaacattattataggattgagtctcttggtcacgggaagagatccaggactttgggtagaattaggttt 27248018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 43139363 - 43139433
Alignment:
Q  23 ggtttagaagccaaca-acaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||||||||||||| | ||||| |||||||||||||||  ||||| ||||||||||||| |||||||||    
T  43139363 ggtttagaagccaacacaaaaacttgggtttgtagagtttgctcttggcaacaaacactagggttgagatt 43139433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 41304678 - 41304590
Alignment:
Q  6 agagagaagaaaaacatgg-tttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| ||||||||| || ||||||||||||||||||| |||||||||||| |||||| | ||| ||||||||| ||| ||| |||||    
T  41304678 agagagtagaaaaacaagggtttagaagccaacaacaaaactagggtttgtaaagttttctattggcaacaaacattagggttaagatt 41304590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 227
Target Start/End: Original strand, 15693921 - 15694083
Alignment:
Q  64 tcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcagg 163  Q
    ||||| ||||||||||| | | || |||||||||| | |||||||||| || | ||| |||||||||||  | ||||||| || | | || |||||  ||    
T  15693921 tcttggcaacaaacacttgggctgggattaaatcaccgttgattcaccgtggagaaacactattaggataaagtctcttggtcacaggaagagatttggg 15694020  T
Q  164 attttgagtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaag 227  Q
    | |||| ||||||||| |||| || ||| |||||| ||||| |||||||| ||| |||||||||    
T  15694021 actttgggtagaattaggtttgaagactaattcttgtaaccttttgatatctct-tttgtaaag 15694083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 45157003 - 45157050
Alignment:
Q  5 gagagagaagaaaaacatggtttagaagccaacaacaaactagggttt 52  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  45157003 gagagagtagaaaaacaaggtttagaagcaaacaacaaactagggttt 45157050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 35028554 - 35028633
Alignment:
Q  14 gaaaaacatggtttagaagccaacaacaaacta-gggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||||| ||||||||| ||||||| ||| |  |||||||||||||||  |||||  |||||||||||| |||||||||    
T  35028554 gaaaaacagggtttagaatccaacaataaaatttgggtttgtagagtttgctcttggtaacaaacactagggttgagatt 35028633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 37171035 - 37170989
Alignment:
Q  13 agaaaaacatggtttagaagccaaca-acaaactagggtttgtagag 58  Q
    ||||||||| |||||||||||||||| |||||||||||||| |||||    
T  37171035 agaaaaacagggtttagaagccaacatacaaactagggtttatagag 37170989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 39287177 - 39287255
Alignment:
Q  5 gagagagaagaaaaacatggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactag 82  Q
    ||||||| ||||||  | ||||||||||||||||| ||| |||||||||||||||  || ||||  |||||||||||||    
T  39287177 gagagagtagaaaacaagggtttagaagccaacaagaaaactagggtttgtagagaattctcttagcaacaaacactag 39287255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 27136304 - 27136201
Alignment:
Q  122 actattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttgatatatctcttt 221  Q
    |||||||||||||||||||||| || | |||| | |||  ||| |||||||||||||| ||||  | |||||||||| |||| | ||||||| ||| |||    
T  27136304 actattaggattgaatctcttggtcacggaaagaaatt-gggactttgagtagaattaggtttggagacttattcttgtaactcattgatatctct-ttt 27136207  T
Q  222 gtaaag 227  Q
    ||||||    
T  27136206 gtaaag 27136201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 57727 - 57518
Alignment:
Q  7 gagagaagaaaaacatggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaa-cactagagttgagattaaatcaacattg 104  Q
    ||||| |||| |||| ||||||||||||||||||||| |||| |||||||||||||  ||||| ||||||| |||||  ||||||||| |||||  || |    
T  57727 gagagtagaagaacaaggtttagaagccaacaacaaaactagagtttgtagagtttactcttggcaacaaaacactatggttgagattgaatcactatag 57628  T
Q  105 a-ttcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaac 203  Q
    | ||||||||||| ||| |||||||||||||||||||||| ||   | || |||||| ||| |||| || |||||| |||| || |  ||||||| ||||    
T  57627 aattcaccttgaaaaaacactattaggattgaatctcttggtcattggaagagattcgggactttgggtggaattaggtttgaagatctattcttgtaac 57528  T
Q  204 cctttgatat 213  Q
    ||||||||||    
T  57527 cctttgatat 57518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 5 - 184
Target Start/End: Original strand, 11066553 - 11066734
Alignment:
Q  5 gagagagaagaaaaacatgg-tttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacat 102  Q
    ||||||| ||||||||| || |||||||| |||||||||| ||   |||||||||||||| ||||| ||| ||||||||| ||||||||| || || |||    
T  11066553 gagagagtagaaaaacaagggtttagaagtcaacaacaaaactgaagtttgtagagttttctcttggcaataaacactagggttgagattgaaccaccat 11066652  T
Q  103 tgattcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagttt 184  Q
    |||||||||||| | ||| |||||||||||||||||| ||| || | | || |||||| ||| |||| ||||||||| ||||    
T  11066653 tgattcaccttggagaaacactattaggattgaatcttttgatcacgggaagagattcgggactttgggtagaattaggttt 11066734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 23941721 - 23941930
Alignment:
Q  6 agagagaagaaaaacatggtttagaagccaacaacaaa-ctagggtttgtagagttttatct--tgtcaacaaacactagagttgagattaaatcaaca- 101  Q
    |||||| ||||||||  ||||||||||||||||||||| ||||||||||||||||||| |||  || ||| ||||||||  |||| |||| ||||| ||     
T  23941721 agagagtagaaaaacg-ggtttagaagccaacaacaaaactagggtttgtagagttttttctcttgacaataaacactaaggttgggattgaatcatcac 23941819  T
Q  102 --ttgattcaccttgaataaatactattaggattgaatctc-ttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattctt 198  Q
      |||||| |||||||||||||||||||||| || | |||| ||| || | | ||||||||| ||| |||| ||||||||| |||| || ||||||||||    
T  23941820 cgttgatttaccttgaataaatactattaggcttaagtctctttggtcacgggaaaagattcgggaatttgggtagaattaggtttgaatacttattctt 23941919  T
Q  199 ttaaccctttg 209  Q
     ||||| ||||    
T  23941920 gtaaccgtttg 23941930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 15823892 - 15823813
Alignment:
Q  13 agaaaaacatggtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||||||||| ||||   |||||||||||| | |||||||    
T  15823892 agaaaaacaaggtttggaagccaacaacaaactagggtttatagagttttctctttgaaacaaacactagggctgagatt 15823813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 11072909 - 11073018
Alignment:
Q  5 gagagagaagaaaaacatgg-tttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacat 102  Q
    ||||||| ||||||||| || |||||||| |||||||||| |||| ||||| |||||||| ||||| |||||||| |||| |||| |||| ||||| |||    
T  11072909 gagagagtagaaaaacaagggtttagaagtcaacaacaaaactagagtttggagagttttctcttggcaacaaac-ctagggttgggattgaatcaccat 11073007  T
Q  103 tgattcacctt 113  Q
    |||||||||||    
T  11073008 tgattcacctt 11073018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 27703459 - 27703383
Alignment:
Q  7 gagagaagaaaaacatggtttagaagccaacaacaaactaggg-tttgtagagttttatcttgtcaacaaacactag 82  Q
    ||||| ||||||||| ||||||||||| ||||| ||||||||| ||||||||| ||| ||||| || ||||||||||    
T  27703459 gagagtagaaaaacaaggtttagaagcaaacaagaaactagggttttgtagagatttctcttggcatcaaacactag 27703383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 13419872 - 13419942
Alignment:
Q  23 ggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| |||||||||| ||| ||||||||||||||||||  ||||| ||||||||||||| |||| ||||    
T  13419872 ggtttaaaagccaacaagaaaactagggtttgtagagtttgctcttggcaacaaacactagggttgggatt 13419942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 26762938 - 26763017
Alignment:
Q  13 agaaaaacatggtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    ||||||||| ||||||||| | |||||||||||||| ||| ||||| ||| || ||  |||||||||||| |||| ||||    
T  26762938 agaaaaacagggtttagaaacgaacaacaaactaggatttatagagatttctcctgggaacaaacactagggttgtgatt 26763017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 42297814 - 42297751
Alignment:
Q  150 gaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttgatat 213  Q
    |||| |||||| |||||||| ||||||||| |||| || ||| |||||| ||||||||||||||    
T  42297814 gaaatagattcgggattttgtgtagaattaggtttgaagactgattcttgtaaccctttgatat 42297751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 562042 - 561981
Alignment:
Q  23 ggtttagaagccaacaacaaactagggtttgta--gagttttatcttgtcaacaaacactag 82  Q
    |||||||||| |||||  |||||||||||||||  ||||||| ||||| |||||||||||||    
T  562042 ggtttagaagtcaacatgaaactagggtttgtatagagttttctcttggcaacaaacactag 561981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 46966921 - 46966851
Alignment:
Q  23 ggtttagaagccaacaacaaact-agggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    ||||||||||||||||||||| | | ||||| ||||| ||  ||||| ||||||||||||| |||||||||    
T  46966921 ggtttagaagccaacaacaaaattaaggtttatagagattcctcttggcaacaaacactagggttgagatt 46966851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 3329794 - 3329867
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactagagttg 87  Q
    |||||| |||||||||||||||| |||||||||||||| |||||  ||| ||||| ||| ||||||||| ||||    
T  3329794 aaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaataaacactagggttg 3329867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 13893363 - 13893440
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| |||||||||| ||||| | |||||||||||| |||||  || ||||| ||||||||||||| |||| ||||    
T  13893363 aaaacaaggtttagaagtcaacataaaaactagggtttatagagaattctcttggcaacaaacactagggttgggatt 13893440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 27762265 - 27762189
Alignment:
Q  17 aaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagatt 92  Q
    ||||| |||||||||||||||| |||||||||||||| |||||  ||| ||||| |||| |||||||| |||||||||    
T  27762265 aaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgagatt 27762189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 16996773 - 16996849
Alignment:
Q  12 aagaaaaacatggtttagaagccaac-aacaaactagggtttgtagagttttatcttgtcaacaaacactagagttg 87  Q
    |||||| ||| ||||||||||||||| ||||||||||||||| |||||  || |||||  || ||||||||| ||||    
T  16996773 aagaaacacaaggtttagaagccaacaaacaaactagggtttatagagaattctcttggtaataaacactagggttg 16996849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 46966813 - 46966724
Alignment:
Q  137 tctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaaga 228  Q
    ||||||| || | ||||||||||| ||| |||| ||||||||| |||| || ||| ||| || ||||| ||||  |||||||||||||||||    
T  46966813 tctcttgctcacggaaaaagattcgggactttgggtagaattaggtttgaagactaattattgtaaccatttg--atatctctttgtaaaga 46966724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 32274193 - 32274105
Alignment:
Q  4 cgagagagaagaaaaacatggtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| | ||||||||| ||||||||||||||||||||||||| |||| ||||| ||| | ||| |||||||||||||||||||||||    
T  32274193 cgagagtggagaaaaacaaggtttagaagccaacaacaaactagagtttatagagatttctattggcaacaaacactagagttgagatt 32274105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 54906620 - 54906845
Alignment:
Q  6 agagagaagaaaaacatggt-ttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaac--- 100  Q
    |||||| ||||||||| ||  |||||||||||||| ||| |||||||||||| |||||| ||||  ||||||||||||| |||| |||| ||||| |       
T  54906620 agagagtagaaaaacaagggcttagaagccaacaataaaactagggtttgtaaagttttctctttgcaacaaacactagggttgggattgaatcatcatt 54906719  T
Q  101 -attgattcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttt 199  Q
     ||||||||||| || | ||| |||||||| ||||| ||||||| || | | || ||||||| || |||  ||||||||| |||| || ||| ||||||     
T  54906720 gattgattcaccatggagaaacactattagaattgagtctcttggtcactggaagagattcaagactttaggtagaattaggtttgaagactgattcttg 54906819  T
Q  200 taaccctttgatatatctctttgtaaag 227  Q
    |||| |||||  ||||||||||||||||    
T  54906820 taactctttg--atatctctttgtaaag 54906845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 5516521 - 5516362
Alignment:
Q  26 ttagaagccaacaacaaac-tagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaatact 124  Q
    |||||| |||||||||||  |||||||||||||| ||| | ||| ||||||||||||| |||| |||| ||||| |||||||||| |||| | ||| ||     
T  5516521 ttagaatccaacaacaaaaatagggtttgtagagatttcttttggcaacaaacactagggttgggattgaatcatcattgattcatcttggagaaacacc 5516422  T
Q  125 attaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagttt 184  Q
    |||||| |||  ||||||| || | | || ||||||  || |||| ||||||||||||||    
T  5516421 attaggtttgggtctcttgctcacgggaagagattcgagactttgcgtagaattaagttt 5516362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 3982467 - 3982253
Alignment:
Q  6 agagagaagaaaaacatggtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattga 105  Q
    |||||| ||||||| | |||| |||| | |||||||||||||||||  ||| | ||| ||||| ||||||||||||| |||||||||   |      | |    
T  3982467 agagagtagaaaaatagggttcagaaacaaacaacaaactagggttcatagtgatttctcttggcaacaaacactagggttgagattgttt------tta 3982374  T
Q  106 ttcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaaccc 205  Q
    ||||||||| | ||| |||||||||||||| | ||||| || | | || |||||  ||| |||| |||||||||||||| || ||| |||||| |||| |    
T  3982373 ttcaccttggagaaacactattaggattgagtttcttggtcacgggaagagatttgggactttgggtagaattaagtttgaagactgattcttgtaacac 3982274  T
Q  206 tttgatatatctctttgtaaag 227  Q
    |||||||| ||| |||||||||    
T  3982273 tttgatatctct-tttgtaaag 3982253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 10112934 - 10113004
Alignment:
Q  23 ggtttagaagccaaca-acaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||||||||||||| | |||||||||||||||||||||  ||||| ||||||||||||| |||||||||    
T  10112934 ggtttagaagccaacacaaaaactagggtttgtagagtttgctcttggcaacaaacactagggttgagatt 10113004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 47566394 - 47566472
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtagagt-tttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| |||||||||||||||| |||||||||||||| |||||  ||||||||| ||||||||||||| |||||||||    
T  47566394 aaaacagggtttagaagccaacatacaaactagggtttatagagaatttatcttggcaacaaacactagggttgagatt 47566472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 26557631 - 26557717
Alignment:
Q  6 agagagaagaaaaacatggtttagaagccaacaacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| ||||||||| || |||||| | || ||||||||||||||| ||||| ||| ||||| ||||||||||||| |||| ||||    
T  26557631 agagagtagaaaaacagggattagaaacaaaaaacaaactagggtttatagagatttctcttggcaacaaacactagggttgggatt 26557717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 52043650 - 52043580
Alignment:
Q  23 ggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||||||||||||| |||| ||| ||||||||||||||| |||||||| |||||||||| |||| ||||    
T  52043650 ggtttagaagccaacatcaaaactaaggtttgtagagttttctcttgtcagcaaacactagggttgggatt 52043580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 36769379 - 36769458
Alignment:
Q  15 aaaaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagatt 92  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||||  ||| ||||| ||||||||||||| |||| ||||    
T  36769379 aaaaacaaggtttagaagccaacatacaaactagggtttgaagagaatttctcttggcaacaaacactagggttgggatt 36769458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 36771304 - 36771375
Alignment:
Q  23 ggtttagaagccaaca-acaaactagggtttgtagagt-tttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||||||||||||| ||||||||||||||| ||||  ||| ||||| ||||||||||||| |||||||||    
T  36771304 ggtttagaagccaacatacaaactagggtttgaagagaatttctcttggcaacaaacactagggttgagatt 36771375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 9863772 - 9863832
Alignment:
Q  23 ggtttagaagccaacaacaaa--ctagggtttgtagagttttatcttgtcaacaaacacta 81  Q
    |||||||||||||| ||||||  ||||||||||||||||||  ||||| ||||||||||||    
T  9863772 ggtttagaagccaaaaacaaaaactagggtttgtagagtttgttcttggcaacaaacacta 9863832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 4558212 - 4558280
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactag 82  Q
    |||||| |||||||||||||||| |||||||||||||| |||||  ||| ||||| |||||||||||||    
T  4558212 aaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaaacactag 4558280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 25357844 - 25357898
Alignment:
Q  172 tagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaag 227  Q
    ||||||||||||| || |||||||||| |||||||||||||| ||| |||||||||    
T  25357844 tagaattaagtttgaagacttattcttgtaaccctttgatatctct-tttgtaaag 25357898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 16638728 - 16638806
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| |||||||||||||||| |||||||||||||| |||||  ||| ||||  ||||||||||||| |||| ||||    
T  16638728 aaaacagggtttagaagccaacatacaaactagggtttatagagaatttctctttgcaacaaacactagggttgggatt 16638806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 4874760 - 4874687
Alignment:
Q  15 aaaaacatggtttagaagccaac-aacaaactagggtttgtagagttttatcttgtcaacaaacactagagttg 87  Q
    ||||||| ||||||||||||||| ||||||||||| |||  ||||  || ||| | ||||||||||||||||||    
T  4874760 aaaaacaaggtttagaagccaacaaacaaactaggatttaaagagaattctctagacaacaaacactagagttg 4874687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 13294675 - 13294850
Alignment:
Q  6 agagagaagaaaaacatggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattg 104  Q
    |||||| ||||||||| || ||| ||| |||||||||| |||| ||||||||||  || ||||| |||||| |||||| |||| |||| ||||| |||||    
T  13294675 agagagtagaaaaacaaggattaaaagtcaacaacaaaactagagtttgtagagaattctcttggcaacaagcactagggttgggattgaatcaccattg 13294774  T
Q  105 attcaccttgaataaat-actattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaatta 179  Q
    ||| |||||||| |||  |||||||||||||| ||||||| || |  ||| |||||||||| ||||  ||||||||    
T  13294775 atttaccttgaacaaaacactattaggattgattctcttgatcacaaaaagagattcaggactttggatagaatta 13294850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 35430179 - 35430300
Alignment:
Q  23 ggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacattgattcaccttgaataaat 121  Q
    |||||||||| ||||| |||| |||||||||||| |||||| ||||| ||| ||||||||| |||  |||| ||||| ||||||||||||||| | |||     
T  35430179 ggtttagaagtcaacatcaaaactagggtttgtacagttttctcttggcaataaacactagggtttggattgaatcaccattgattcaccttggagaaac 35430278  T
Q  122 actattaggattgaatctcttg 143  Q
    |||||||  ||||| |||||||    
T  35430279 actattacaattgagtctcttg 35430300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 34033769 - 34033686
Alignment:
Q  101 attgattcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagttt 184  Q
    ||||||| |||||| | ||| |||||||||||||| ||||||| |||| | || ||||||||||||||| ||||||||||||||    
T  34033769 attgatttaccttggagaaacactattaggattgagtctcttggtcgcgggaagagattcaggattttgggtagaattaagttt 34033686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 2144764 - 2144639
Alignment:
Q  101 attgattcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattctttt 200  Q
    |||||||||||||| | ||| ||||||||||| || ||||||| |||| | || |||||||||| |||| || |||||| |||| || ||| |||||| |    
T  2144764 attgattcaccttggagaaacactattaggatggagtctcttggtcgcgggaagagattcaggactttgggtggaattaggtttgaagactaattcttgt 2144665  T
Q  201 aaccctttgatatatctctttgtaaag 227  Q
    || |||||  |||||||||||||||||    
T  2144664 aa-ccttttttatatctctttgtaaag 2144639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 13295734 - 13295825
Alignment:
Q  8 agagaagaaaaacatggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatca 98  Q
    |||| |||||||||||| ||| |||||||||||||| |||||||||||| ||  || | ||| |||||||||||||||||| |||| |||||    
T  13295734 agagtagaaaaacatggattaaaagccaacaacaaaactagggtttgtatagaattcttttggcaacaaacactagagttgggattcaatca 13295825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 5777890 - 5777788
Alignment:
Q  5 gagagagaagaaaaacatggtttagaagccaacaac-aaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagattaaatcaacat 102  Q
    ||||||| ||||||||| || ||||||||||||||| ||||||| |||||||||| |||| ||||| ||||||| | ||| |||| |||| ||||| |||    
T  5777890 gagagagtagaaaaacaaggattagaagccaacaacaaaactagagtttgtagagtttttctcttgacaacaaatagtagggttgggattgaatcaccat 5777791  T
Q  103 tga 105  Q
    |||    
T  5777790 tga 5777788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 26406753 - 26406676
Alignment:
Q  16 aaaacatggtttagaagccaacaa-caaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| ||||||||| ||||||| ||||||||||||| |||||  || ||||| ||||||||||||| |||||||||    
T  26406753 aaaacagggtttagaaaccaacaaacaaactagggtttatagagaattctcttggcaacaaacactagggttgagatt 26406676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 32520421 - 32520625
Alignment:
Q  5 gagagagaagaaaaacatggtttagaagccaacaac-aaactagggtttgtagagttttatcttgtcaacaaacactagagttgagattaaatcaacatt 103  Q
    ||||||| ||||||| | || ||||||||||||||| |||||| ||||||||||| | | |  || ||||||||||||  ||||  ||| ||||| ||||    
T  32520421 gagagagtagaaaaataaggattagaagccaacaacaaaacta-ggtttgtagagatctctggtggcaacaaacactatggttggaattgaatcatcatt 32520519  T
Q  104 gattcaccttgaataaatactattaggattgaatctcttgttcgccgaaaaagattcaggattttgagtagaattaagtttcaacacttattcttttaac 203  Q
    ||||||| ||  | ||| ||||||| |||||| ||||| | |  | | || ||||||| || |||| ||||||||| |||| || ||| |||||| ||||    
T  32520520 gattcacattcgagaaacactattaagattgagtctctcgattacgggaagagattcatgactttgggtagaattaggtttgaaaactgattcttgtaac 32520619  T
Q  204 cctttg 209  Q
    ||||||    
T  32520620 cctttg 32520625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 4754166 - 4754236
Alignment:
Q  23 ggtttagaagccaacaacaa-actagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| |||||||||  || |||||||||||||||||||  ||||| ||||||||||||| |||||||||    
T  4754166 ggtttaaaagccaacacaaacactagggtttgtagagtttgctcttggcaacaaacactagggttgagatt 4754236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 15143605 - 15143669
Alignment:
Q  162 ggattttgagtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaag 227  Q
    |||||||| ||||||||| |||| || |||||||||| |||||||||||||| ||| |||||||||    
T  15143605 ggattttgggtagaattaggtttgaagacttattcttgtaaccctttgatatctct-tttgtaaag 15143669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 40222662 - 40222742
Alignment:
Q  13 agaaaaacatggtttagaagccaaca-acaaactagggtttgtagag-ttttatcttgtcaacaaacactagagttgagatt 92  Q
    ||||||||| |||||||||||||||| |||||||||||||| |||||  ||| ||||| |||| |||||||| |||||||||    
T  40222662 agaaaaacaaggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgagatt 40222742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 16093571 - 16093448
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtagagt-tttatcttgtcaacaaacactagagttgagattaaatcaacattgattcacctt 113  Q
    |||||| |||||||||||||||| |||||||||||||| ||||   ||| ||||| ||||||||||||| |||| |||    |      |||||||||||    
T  16093571 aaaacagggtttagaagccaacatacaaactagggtttatagataatttctcttggcaacaaacactagggttgggatctttt------tgattcacctt 16093478  T
Q  114 gaataaatactattaggattgaatctcttg 143  Q
    ||| ||| |||||||||||||| |||||||    
T  16093477 gaaaaaacactattaggattgagtctcttg 16093448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 31782738 - 31782660
Alignment:
Q  16 aaaacatggtttagaagccaaca-acaaactagggtttgtaga-gttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| |||||||||||||||| |||||||||||||| ||||   ||| ||||| ||||||||||||| |||| ||||    
T  31782738 aaaacagggtttagaagccaacatacaaactagggtttatagataatttctcttggcaacaaacactagggttgggatt 31782660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 42238202 - 42238248
Alignment:
Q  13 agaaaaacatggtttagaagccaaca-acaaactagggtttgtagag 58  Q
    ||||||||| |||||||||||||||| |||||||||||||| |||||    
T  42238202 agaaaaacagggtttagaagccaacatacaaactagggtttatagag 42238248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 1240327 - 1240372
Alignment:
Q  13 agaaaaacatggtttagaagccaaca-acaaactagggtttgtaga 57  Q
    ||||||||| |||||||||||||||| |||||||||||||| ||||    
T  1240327 agaaaaacagggtttagaagccaacatacaaactagggtttataga 1240372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 25838009 - 25838086
Alignment:
Q  16 aaaacatggtttagaagccaac-aacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagatt 92  Q
    |||||| ||||||||||||||| || |||||| ||||| |||||  || |||||  |||||||||||| |||||||||    
T  25838009 aaaacaaggtttagaagccaacaaagaaactatggtttatagagaattctcttggtaacaaacactagggttgagatt 25838086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 35314702 - 35314779
Alignment:
Q  15 aaaaacatggtttagaagccaa-caacaaactagggtttgtagagttttatcttgtcaacaaacactagagttgagat 91  Q
    ||||||| ||||||||| | || ||||||||||| |||| ||| | ||| ||||| ||||||||||||| ||||||||    
T  35314702 aaaaacagggtttagaaacaaaacaacaaactagagtttataggggtttctcttggcaacaaacactagggttgagat 35314779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 36402525 - 36402485
Alignment:
Q  102 ttgattcaccttgaataaatactattaggattgaatctcttg 143  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  36402525 ttgattcaccttgga-aaatactattaggattgaatctcttg 36402485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 17413298 - 17413243
Alignment:
Q  171 gtagaattaagtttcaacacttattcttttaaccctttgatatatctctttgtaaag 227  Q
    ||||||||| |||| || |||||||||| |||||||||||||| ||| |||||||||    
T  17413298 gtagaattaggtttgaaaacttattcttgtaaccctttgatatctct-tttgtaaag 17413243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 29748359 - 29748415
Alignment:
Q  23 ggtttagaagccaacaacaaa-ctagggtttgtagagttttatcttgtcaacaaaca 78  Q
    ||||||||||||||||| ||| |||||||||||||||  || ||||| |||||||||    
T  29748359 ggtttagaagccaacaagaaaactagggtttgtagagaattctcttggcaacaaaca 29748415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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