View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17453_high_16 (Length: 325)
Name: NF17453_high_16
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_high_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 1917229 - 1917528
Alignment:
| Q |
14 |
ttctcctacactttcctctgcaattggaaacctcattcctgcttttaccttcatgttagctgtcatttgcaggtttcctccactctcataattgacnnnn |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1917229 |
ttctcctacactttcctctgcaattggaaacctcattcctgcttttaccttcatgttagctgtcatttgcaggtttcctccactctcataattgacaaaa |
1917328 |
T |
|
| Q |
114 |
nnnntaa--ttaccaacttcattttattaataaggtccaatccaataattttttataatttttgctagacaaagagggccaaagctctattattttagtc |
211 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1917329 |
aaaaaaaaattaccaacttcattttattaataaggtccaatccaataattttttataatttttgctagacaaagtgggccaaagctctattattttagtc |
1917428 |
T |
|
| Q |
212 |
caatccaataagcaccataaatattaatgttagaactccacagtgtggttagttacagattgattagaatgagcaaaatgaaagatacattgaaaagatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1917429 |
caatccaataagcaccataaatattaatgttagaactccactgtgtggttagttacacattgattagaatgagcaaaatgaaagatacattgaaaagatt |
1917528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University