View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17453_high_2 (Length: 508)
Name: NF17453_high_2
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Complemental strand, 391607 - 391193
Alignment:
| Q |
17 |
acttaaattagatagttggacgaggttcaaatggattacacgatatttacatgaaatgaaattaatttaatggcatccaatgtcgtctttatggtaaaga |
116 |
Q |
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| T |
391607 |
acttagattagatagttggacgaggttcaaatggattacacgatatttacatgaaatgaaattaatttaatggcatccaatgtcgtctttatggtaaaga |
391508 |
T |
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| Q |
117 |
cttaaggtacccttggcaaaagtttggtccaactgtggaccttctacttctagtacagcctactaggtaatataagtggctgatgtaatgaaggcttaaa |
216 |
Q |
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| T |
391507 |
cttaaggtacccttggaaaaagtttggtccaactgtggaccttctacttctagtacagcctactaggtaatataagtggctgatgtcatgaaggcttaaa |
391408 |
T |
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| Q |
217 |
tactactttggtttcttaatttattataaatcaatttagttacttaccttaaaaattgattaatttggtcaattatcctattcaaatagggtaaattttt |
316 |
Q |
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| T |
391407 |
tactactttgatttcttaatttattttaaatcaatttagttacttaacttaaaaattgattaatttggtcaattaacttattcaaatagggtaaaatttt |
391308 |
T |
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| Q |
317 |
ataaaataaataaata----aatacatggtaagagaaaacttttaactttctttcttccgttttccttataccaaataattcaaaaatcatctatatttt |
412 |
Q |
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| T |
391307 |
ataaaataaataaataaataaatacatggtatgagaaaacttttaactttctttcttccgttttccttataccaaataattcaaaaatcatctatatttt |
391208 |
T |
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| Q |
413 |
ttacttaaatgtaat |
427 |
Q |
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| T |
391207 |
ttacttaaatgtaat |
391193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 447 - 508
Target Start/End: Complemental strand, 391143 - 391082
Alignment:
| Q |
447 |
atgaaatagggttataggcgctagtcctcctacttttaattgctcaactcctcgtattattt |
508 |
Q |
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| T |
391143 |
atgaaatagggttataggcgctagtcctcctacttttaattgcgcaactcctcgtattattt |
391082 |
T |
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