View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17453_high_33 (Length: 217)
Name: NF17453_high_33
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 17782206 - 17782413
Alignment:
| Q |
1 |
aaaaccacagaagcaagaggctgcaaatcgagccactgcattatataattatattggactgggtttggatcccattcagccggtccaacaagatcaataa |
100 |
Q |
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| T |
17782206 |
aaaaccacagaagcaagaggctgcaaatcgagccactccattatataattatattggactgggtttggatcccattcagccggtccaacaagatcaataa |
17782305 |
T |
|
| Q |
101 |
ccggcccaattgtgtaaaccggtggaagttgtgaatcatcataaagtgattgaagagcgtagggttcaagctcttgtaacgtatttaccacgataccctt |
200 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17782306 |
ccggcccaattgtgtaaaccggtggaagctgcgaatcatcataaagtgattgaagagcgtagggttcaagctcttgtaacgtatttaccacgataccctt |
17782405 |
T |
|
| Q |
201 |
tgcttctc |
208 |
Q |
| |
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|| ||||| |
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| T |
17782406 |
tgtttctc |
17782413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 20582551 - 20582758
Alignment:
| Q |
1 |
aaaaccacagaagcaagaggctgcaaatcgagccactgcattatataattatattggactgggtttggatcccattcagccggtccaacaagatcaataa |
100 |
Q |
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||||||||||| ||| || ||||||||| | ||||| ||| ||||||||||| |||||||||||||| ||||||| ||||||||||||| || | || |
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| T |
20582551 |
aaaaccacagacccaacagactgcaaatctaaccactccatgatataattatactggactgggtttgggtcccattggaccggtccaacaaggtcgagaa |
20582650 |
T |
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| Q |
101 |
ccggcccaattgtgtaaaccggtggaagttgtgaatcatcataaagtgattgaagagcgtagggttcaagctcttgtaacgtatttaccacgataccctt |
200 |
Q |
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|||| ||||||| |||||| |||||||| || |||| | ||||||||||| ||||| || ||||||||||||||||| ||||||||||| |||||||| |
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| T |
20582651 |
ccggtccaattgggtaaacaggtggaagctgcaaatccttgtaaagtgattgtagagcataaggttcaagctcttgtaatgtatttaccacaataccctt |
20582750 |
T |
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| Q |
201 |
tgcttctc |
208 |
Q |
| |
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|| ||||| |
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| T |
20582751 |
tgtttctc |
20582758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 20563388 - 20563594
Alignment:
| Q |
1 |
aaaaccacagaagcaagaggctgcaaatcgagccactgcattatataattatattggactgggtttggatcccattcagccggtccaacaagatcaataa |
100 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||| || || |||||||| || || |||||||||||||||| |||||||||||||||||| || |
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| T |
20563388 |
aaaaccacagatttaacaggctgcaaatcaagccactccacgatgtaattatactgtaccgggtttggatcccattggaccggtccaacaagatcaagaa |
20563487 |
T |
|
| Q |
101 |
ccggcccaattgtgtaaaccggtggaagttgtgaatcatcataaagtgattgaagagcgtagggttcaagctcttgtaacgtatttaccacgataccctt |
200 |
Q |
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|||| ||||||| |||||| |||||||| || |||||| | |||||||| ||||||||| ||||||||||||| ||| |||||||| | |||||||| |
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| T |
20563488 |
ccggtccaattgggtaaacaggtggaagctgcaaatcattgtgaagtgattcaagagcgtatggttcaagctcttttaatgtatttacgataataccctt |
20563587 |
T |
|
| Q |
201 |
tgcttct |
207 |
Q |
| |
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|| |||| |
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| T |
20563588 |
tgtttct |
20563594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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