View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17453_high_4 (Length: 427)
Name: NF17453_high_4
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 26 - 306
Target Start/End: Original strand, 1479320 - 1479598
Alignment:
| Q |
26 |
ctgagttgtgaattagggggacttattgacaagtagttagttttggtggcttaattgctctttggcagtagttgtgcattttagttttaggagaagattt |
125 |
Q |
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| T |
1479320 |
ctgagttgtgaattagggggacttattgacaagcagttagttttggtggcttaattgctctttggcagtagttgtgcattttagttttaggagaagattt |
1479419 |
T |
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| Q |
126 |
tgttttcttttcctctatagtgcactcaattccggttgatatttggtagttgttatgtttattagcatgttcctttgtcctccttgtatttcttgttata |
225 |
Q |
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| T |
1479420 |
tgttttcttttcctctatagtgcactcaattccggttgatatttggtagttgttatgtttattagcatgttcctttgtcctccttgtatttcttgttata |
1479519 |
T |
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| Q |
226 |
tgaatattctctatcaataaaaattttggattaaaaaatatatatagttacttcggcatcacattttaatccaaaatttta |
306 |
Q |
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| T |
1479520 |
tgaatattctctatcaataaattttttggattaaaaa--atatatagttacatcagcaccatattttaacccaaaacttta |
1479598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 303 - 417
Target Start/End: Original strand, 1479625 - 1479739
Alignment:
| Q |
303 |
tttatatagtgctcaatatccactttttcatctaatatgagactcttttacccacacttaatataccaacacaattttattaaaaataatagaaaattga |
402 |
Q |
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| T |
1479625 |
tttatatagtgctcaatatccacttttccatctaatatgagactcttttacccacacttaatataccaacacaattttattaaaaataatagaaaattga |
1479724 |
T |
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| Q |
403 |
ttatttgtttatatt |
417 |
Q |
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| T |
1479725 |
ttatttgtttatatt |
1479739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 23210891 - 23210933
Alignment:
| Q |
304 |
ttatatagtgctcaatatccactttttcatctaatatgagact |
346 |
Q |
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| T |
23210891 |
ttatatagtgttcaacatccattttttcatctaatatgagact |
23210933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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