View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17453_low_10 (Length: 358)
Name: NF17453_low_10
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 343
Target Start/End: Original strand, 25127002 - 25127333
Alignment:
| Q |
14 |
aacctgtgtttcagctccgacggctgctttaacagcatccaagattgttgaacctaaaatggtaaggtatacaagttaaagtgtttctacgacaaccatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
25127002 |
aacctgtgtttcagctccgacggctgctttaacagcatccaagattgttgaacctaaaatggtaaggtataaaagttaaagtggttctacgacaaccatg |
25127101 |
T |
|
| Q |
114 |
tttaacaaaggagaaacaaatacagaatagtgtgaaacaggaaagatatagtattaacatttcgccataaatgtgttttggtatgtaaaagatagttcaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25127102 |
tttaacaaaggagaaacaaatacagaatagtgtgaaacaggaaagatatagtattaacatttcgccataaatgtgttttggtatgtaaaagatagttcaa |
25127201 |
T |
|
| Q |
214 |
aataattaata--gttttttatgtaaaatgtagtacaagttttttaaccaaacacactgaaatcaatcttcatattctccataaatatcatagcttacca |
311 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25127202 |
aataattaatattgttttttatgtaaaatgtagtacaaattttttaaccaaacacactgaaatcaatcttcatattctccattaatatcatagcttacca |
25127301 |
T |
|
| Q |
312 |
actgtgatcctcccactagcaccataccaagt |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
25127302 |
actgtgatcctcccactagcaccataccaagt |
25127333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University