View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17453_low_11 (Length: 354)
Name: NF17453_low_11
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 31834628 - 31834886
Alignment:
| Q |
22 |
aatgtcttgttactgtcaacgactatatcatcaaatttcacagcagagatattaatgccacagagcaaagttagcacatggtttatgacattttctgcgt |
121 |
Q |
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| T |
31834628 |
aatgtcttgttactgtcaacgactatatcatcaaatttcacagcagagatattaatgccacagagcaaagttagcacatggtttatgacattttctgcgt |
31834727 |
T |
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| Q |
122 |
catatacttccgttgaaaattcttgctatacnnnnnnngcttcaagtacatatacttccattaatttataattctttgcatttaaaagagatatctaaaa |
221 |
Q |
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| T |
31834728 |
catatacttccgttgaaaattcttgctatacttttttagcttcaagtacatatacttccattaatttataattctttgcatttaaaagagatatctaaaa |
31834827 |
T |
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| Q |
222 |
tcagagaagattttcctctgcatttatgaaacaccctaccaaaactatacatacccata |
280 |
Q |
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| T |
31834828 |
tcagagaagattttcctctgcatttatgaaacaccctaccaaaactatacatacccata |
31834886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 346
Target Start/End: Original strand, 31834924 - 31834954
Alignment:
| Q |
316 |
ctacgtagcaccagtagttactagtataatc |
346 |
Q |
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| T |
31834924 |
ctacgtagcaccagtagttactagtataatc |
31834954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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