View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17453_low_14 (Length: 331)
Name: NF17453_low_14
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 37880190 - 37880491
Alignment:
| Q |
21 |
caacagaatacacaattcttcatgttgttgagctcatagataatggcaagtgggctggggtaatgttgtaatatgaccttagtatttaaatacaacttat |
120 |
Q |
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| T |
37880190 |
caacagaatacacaattcttcatgttgttgagctcatagataatggcaagtgggcaggggtaatgttgtaatatgaccttagtatttaaatacaacttat |
37880289 |
T |
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| Q |
121 |
ccactgtaaactctaatctttcaataataatacaaatgaactaaagctactcttcaaacatcgtaaccaaatttcgtgtgttcattgtttctttgctctt |
220 |
Q |
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| T |
37880290 |
ccactgtaaactctaatctttcaataataatacaaatgaactaaagctactcttcaaacatcgtaaccaaatttcgtgtgtttattgtttctttgctctt |
37880389 |
T |
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| Q |
221 |
cttgaattgagttgctgttctaacacctaatataaatatttataaaattagaaattaaccaaatgctataaaatttctccttaagagtattatgtttcat |
320 |
Q |
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| T |
37880390 |
cttgaattgagttgctgttctaacacctaatataaatatttataaaattagaaattaaccaaatgctataaaatttctccttaagagtattatgtttcat |
37880489 |
T |
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| Q |
321 |
ct |
322 |
Q |
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|| |
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| T |
37880490 |
ct |
37880491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 41921836 - 41921778
Alignment:
| Q |
103 |
tatttaaatacaacttatccactgtaaactctaatctttcaataataatacaaatgaac |
161 |
Q |
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| T |
41921836 |
tatttaaatacaagttgtacattgtaaactctaatctgtcactaataatacaaatgaac |
41921778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 14297992 - 14298054
Alignment:
| Q |
100 |
tagtatttaaatacaacttatccactgtaaactctaatctttcaataataatacaaatgaact |
162 |
Q |
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| T |
14297992 |
tagtatttaaatacaagttgtatactgtaaactctaatctttcactaatagtagaaatgaact |
14298054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 32666909 - 32666965
Alignment:
| Q |
100 |
tagtatttaaatacaacttatccactgtaaactctaatctttcaataataatacaaa |
156 |
Q |
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| T |
32666909 |
tagtatttaaatacaagttttgcaccgtaaactctaatgtttcactaataattcaaa |
32666965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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