View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17453_low_17 (Length: 326)
Name: NF17453_low_17
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 105 - 315
Target Start/End: Complemental strand, 23968755 - 23968545
Alignment:
| Q |
105 |
taataagcataatatataaattattgtaaaatagagataagtatagattgttagtattccttagtaacaggaaattgactgtgttgagttgttggagtca |
204 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23968755 |
taataagcataatatataaattattgtaaaatagagataagtatagattgttagtattccttagtaacaggaaattgactgtgatgagttgttggagtca |
23968656 |
T |
|
| Q |
205 |
tagccactgccttaggaataggttagcaacaacaaaaagttatacgctccactccttaagattaggaactgaagctcctctcttgtaccttaaatactga |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23968655 |
tagccactgccttaggaataggttagcaacaacaataagttatacgctccactccttaagattaggaactgaagctcctctcttgtaccttaaatactga |
23968556 |
T |
|
| Q |
305 |
tgtatctctct |
315 |
Q |
| |
|
||||||||||| |
|
|
| T |
23968555 |
tgtatctctct |
23968545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 105 - 315
Target Start/End: Complemental strand, 23974344 - 23974134
Alignment:
| Q |
105 |
taataagcataatatataaattattgtaaaatagagataagtatagattgttagtattccttagtaacaggaaattgactgtgttgagttgttggagtca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23974344 |
taataagcataatatataaattattgtaaaatagagataagtatagattgttagtattccttagtaacaggaaattgactgtgatgagttgttggagtca |
23974245 |
T |
|
| Q |
205 |
tagccactgccttaggaataggttagcaacaacaaaaagttatacgctccactccttaagattaggaactgaagctcctctcttgtaccttaaatactga |
304 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23974244 |
tacccactgccttaggaataggttagcaaaaacaataagttatacgctccactccttaagattaggaactgaagctcctctcttgtaccttaaatactga |
23974145 |
T |
|
| Q |
305 |
tgtatctctct |
315 |
Q |
| |
|
||||||||||| |
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|
| T |
23974144 |
tgtatctctct |
23974134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 105 - 315
Target Start/End: Complemental strand, 9130187 - 9129977
Alignment:
| Q |
105 |
taataagcataatatataaattattgtaaaatagagataagtatagattgttagtattccttagtaacaggaaattgactgtgttgagttgttggagtca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9130187 |
taataagcataatatataaattattgtaaaatagagataagtattgattgttagtattccttagtaacaggaaattgactgtgttgagttgttggagtca |
9130088 |
T |
|
| Q |
205 |
tagccactgccttaggaataggttagcaacaacaaaaagttatacgctccactccttaagattaggaactgaagctcctctcttgtaccttaaatactga |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9130087 |
tagccactgccttaggaataggttagcaacaacaataagttatacgctccactccttaagattaggaactgaagctcctctcttgtaccttaaatactga |
9129988 |
T |
|
| Q |
305 |
tgtatctctct |
315 |
Q |
| |
|
||||||||||| |
|
|
| T |
9129987 |
tgtatctctct |
9129977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 105 - 315
Target Start/End: Complemental strand, 9138294 - 9138084
Alignment:
| Q |
105 |
taataagcataatatataaattattgtaaaatagagataagtatagattgttagtattccttagtaacaggaaattgactgtgttgagttgttggagtca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9138294 |
taataagcataatatataaattattgtaaaatagagataagtattgattgttagtattccttagtaacaggaaattgactgtgttgagttgttggagtca |
9138195 |
T |
|
| Q |
205 |
tagccactgccttaggaataggttagcaacaacaaaaagttatacgctccactccttaagattaggaactgaagctcctctcttgtaccttaaatactga |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9138194 |
tagccactgccttaggaataggttagcaacaacaataagttatacgctccactccttaagattaggaactgaagctcctctcttgtaccttaaatactga |
9138095 |
T |
|
| Q |
305 |
tgtatctctct |
315 |
Q |
| |
|
||||||||||| |
|
|
| T |
9138094 |
tgtatctctct |
9138084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 104 - 315
Target Start/End: Original strand, 39295490 - 39295706
Alignment:
| Q |
104 |
ttaataagcataatatataaattattgtaaaatagagataagtatagattgttagtattccttagtaacaggaaattgactgtgttgagttgttggagtc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
39295490 |
ttaataagcataatatataaattattgtaaaatagagataagtatagattgttagtattccttagtaacaggaaattgactatgttgagttgttggagtc |
39295589 |
T |
|
| Q |
204 |
atagccactgccttaggaataggt-----tagcaacaacaaaaagttatacgctccactccttaagattaggaactgaagctcctctcttgtaccttaaa |
298 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39295590 |
atagccactgcctttggaataggttagcatagcaacaacaataagttatacgctccactccttaagattaggaactgaagctcctctcttgtaccttaaa |
39295689 |
T |
|
| Q |
299 |
tactgatgtatctctct |
315 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
39295690 |
tactgatgtatctctct |
39295706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 105 - 315
Target Start/End: Complemental strand, 18185501 - 18185292
Alignment:
| Q |
105 |
taataagcataatatataaattattgtaaaatagagataagtatagattgttagtattccttagtaacaggaaattgactgtgttgagttgttggagtca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||| ||||||| | ||||||||||||||||||||| |
|
|
| T |
18185501 |
taataagcataatatataaattattgtaaaatagagataagcatagattgtttgtattccttggtaac-ggaaattcattgtgttgagttgttggagtca |
18185403 |
T |
|
| Q |
205 |
tagccactgccttaggaataggttagcaacaacaaaaagttatacgctccactccttaagattaggaactgaagctcctctcttgtaccttaaatactga |
304 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18185402 |
tagccactgccttaggaataggttagtaacaacaataagttatatgctccactccttaagattaggaactgaagctcctctcttgtaccttaaatactga |
18185303 |
T |
|
| Q |
305 |
tgtatctctct |
315 |
Q |
| |
|
||||||||||| |
|
|
| T |
18185302 |
tgtatctctct |
18185292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 43495950 - 43496053
Alignment:
| Q |
1 |
ctgaagaatttaagccaannnnnnncatttctgtgatcaccacagctagaaggtatttctaaatcattatcaaactagtgtggcttaatgtaaaggttcg |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43495950 |
ctgaagaatttaagccaatttttatcatttctgtgatcaccacagctagaaggtatttctaaatcattatcaaactagtgtggcttaatgtaaaggttct |
43496049 |
T |
|
| Q |
101 |
tctt |
104 |
Q |
| |
|
|||| |
|
|
| T |
43496050 |
tctt |
43496053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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