View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17453_low_18 (Length: 325)

Name: NF17453_low_18
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17453_low_18
NF17453_low_18
[»] chr6 (1 HSPs)
chr6 (14-311)||(1917229-1917528)


Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 1917229 - 1917528
Alignment:
Q  14 ttctcctacactttcctctgcaattggaaacctcattcctgcttttaccttcatgttagctgtcatttgcaggtttcctccactctcataattgacnnnn 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  1917229 ttctcctacactttcctctgcaattggaaacctcattcctgcttttaccttcatgttagctgtcatttgcaggtttcctccactctcataattgacaaaa 1917328  T
Q  114 nnnntaa--ttaccaacttcattttattaataaggtccaatccaataattttttataatttttgctagacaaagagggccaaagctctattattttagtc 211  Q
         ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1917329 aaaaaaaaattaccaacttcattttattaataaggtccaatccaataattttttataatttttgctagacaaagtgggccaaagctctattattttagtc 1917428  T
Q  212 caatccaataagcaccataaatattaatgttagaactccacagtgtggttagttacagattgattagaatgagcaaaatgaaagatacattgaaaagatt 311  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1917429 caatccaataagcaccataaatattaatgttagaactccactgtgtggttagttacacattgattagaatgagcaaaatgaaagatacattgaaaagatt 1917528  T

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