View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17453_low_19 (Length: 314)
Name: NF17453_low_19
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 304
Target Start/End: Original strand, 11353901 - 11354208
Alignment:
| Q |
17 |
actatgaaaccaatcagaaaaagtgagctttttgtctctattggatgttaataaactactcgtgataatctt--------------------cgtaacga |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11353901 |
actatgaaaccaatcagaaaaagtgagctttttgtctctattggatgttaataaactactcgtgataatcttttgatactatcaatcaccttcgtaacga |
11354000 |
T |
|
| Q |
97 |
cctatccgttaaataaaataatgtttctctccaatcaaatgcatcaacatgttgataatcaaaataaatgtgatgccttatatactttctactccaaaaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11354001 |
cctatccgttaaataaaataatgtttctctccaatcaaatgcatcaacatgttgataatcaaaataaatgtgatgccttatacactttctactccaaaaa |
11354100 |
T |
|
| Q |
197 |
tgccttattctctctttttgaatgataccataatttcacaattttgatctcaacccataatttttatccaaaaatggttatttttagttataaaagtggc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11354101 |
tgccttattctctctttttgaatgataccataatttcacaattttgatctcaacccataatttttatccaaaaatggttatttttagttataaaagtggc |
11354200 |
T |
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| Q |
297 |
atgttctt |
304 |
Q |
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|||||||| |
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| T |
11354201 |
atgttctt |
11354208 |
T |
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