View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17453_low_20 (Length: 305)
Name: NF17453_low_20
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 1178739 - 1178459
Alignment:
| Q |
18 |
gtatacttactaacagaaagaaagaaataaaaatatcctagtgcggtgagctaggttgacaagggagttatgctctgtaaatactcagaaccccataaac |
117 |
Q |
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| T |
1178739 |
gtatacttactaacagaaagaaagaaataaaaatatcctagtgcggtgagctaggttgacaagggagttatgctctgtaaatactcagaaccccataaac |
1178640 |
T |
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| Q |
118 |
atctatagtaaatcgaaacataaatttgaaaatcgcttagcgagttgccttgatcgtcatatgaagccagcagctttccaacctttcctccaaagacttg |
217 |
Q |
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| T |
1178639 |
atctatagtaattcaaaacataaatttgaaaatcgctgagcgagttgccttgatcgtcatatgatgccagcaactttccaacctttcctccaaagacttg |
1178540 |
T |
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| Q |
218 |
atcgccatccttccagaaatcacttatgcaacatgtccacggaactggcccaatgttgtaaattttggtccacaggttctg |
298 |
Q |
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| T |
1178539 |
atcgccatccttccagaaatcacttatgcaacatgtccacggaactggcccaatgttgtaaattttggtccaccggttctg |
1178459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 66 - 277
Target Start/End: Original strand, 6840208 - 6840417
Alignment:
| Q |
66 |
agctaggttgacaagggagttatgctctgtaaatactcagaaccccataaacatctatagtaaatcgaaacataaatttgaaaatcgcttagcgagttgc |
165 |
Q |
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| T |
6840208 |
agctaggttgacaagggagttatgctctgcaaatactcatgacccaataaacatctatcatacttc--aatagaagtttgagattcgctatgcaggtttc |
6840305 |
T |
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| Q |
166 |
cttgatcgtcatatgaagccagcagctttccaacctttcctccaaagacttgatcgccatccttccagaaatcacttatgcaacatgtccacggaactgg |
265 |
Q |
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| T |
6840306 |
cttgatcttcatacgaagtcagcagctgtccaacctttcctccaaaaactcgatcgccatccttccaaaaaccacgtctgcaacaagtccactcaaccgg |
6840405 |
T |
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| Q |
266 |
cccaatgttgta |
277 |
Q |
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| T |
6840406 |
tccaatgttgta |
6840417 |
T |
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