View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17453_low_22 (Length: 298)
Name: NF17453_low_22
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 1046792 - 1047066
Alignment:
| Q |
1 |
tcaaatccgaaggcattggggctttacatggttaatgccctcaataaatatggtattttgtattgtcatatggtagaatgaataagtaatgaaactattg |
100 |
Q |
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| T |
1046792 |
tcaaatccgaaggcattggggctttacatggttaatgccctcaataaatatggtattctgtattgtcatatggtagaatgaataagtaatgaaactattg |
1046891 |
T |
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| Q |
101 |
acgataaaacaaaatgtcttcacaacttggtgccagcgagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacgggatcaa |
200 |
Q |
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| T |
1046892 |
atgataaaacaaaatgtcttcacaacttggtgccagtgagaaaggctttcaatggcactttcatggttaccggaagctatgaaagactagacgggatcaa |
1046991 |
T |
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| Q |
201 |
tgctatagctgaaaataggccagatcttgttgcttacgaccgttttattcatagctaatccagatttgccaaagag |
276 |
Q |
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| T |
1046992 |
tgctatagctgaaaatagggtagatcttgttgcttacgaccg-tttattcatagctaatccagatttgccaaagag |
1047066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 1053481 - 1053738
Alignment:
| Q |
15 |
attggggctttacatggttaatgccctcaataaatatggtattttgtattgtcatatggtagaatgaataagtaatgaaactattgacgataaaacaaaa |
114 |
Q |
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| T |
1053481 |
attgggactttatatggtgaatgccctcaataaatatggtattctttattgtcatatggtggaaccaagaatg---gaaattcttgatgagaaaactgaa |
1053577 |
T |
|
| Q |
115 |
tgtcttcacaacttggtgccagcgagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctgaaa |
214 |
Q |
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| T |
1053578 |
tgtcattatagcttggtgtcaataagaaaggttttcaatggaacttttatggttactggaggctatgaaagacaagatggaatcaatgctatagctgaaa |
1053677 |
T |
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| Q |
215 |
ataggccagatcttgttgcttacgaccgttttattcatagctaatccagatttgccaaagag |
276 |
Q |
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| T |
1053678 |
atagggcagatcttattgcttatggtcg-tttgttcatatctaatccagatttaccaaagag |
1053738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 276
Target Start/End: Original strand, 1044333 - 1044480
Alignment:
| Q |
128 |
tggtgccagcgagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctgaaaataggccagatct |
227 |
Q |
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|||||||| ||||||||||||||||| | ||||||||| | | ||| ||||||| |||| |||||||||| |||||||||||||||| | | ||||||| |
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| T |
1044333 |
tggtgccaatgagaaaggctttcaatggctctttcatggctgcaggaggctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatct |
1044432 |
T |
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| Q |
228 |
tgttgcttacgaccgttttattcatagctaatccagatttgccaaagag |
276 |
Q |
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| T |
1044433 |
tgtagtttatggtcg-tttgttcttagcaaatccagatttgccaaagag |
1044480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 1033956 - 1034093
Alignment:
| Q |
138 |
gagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctgaaaataggccagatcttgttgcttac |
237 |
Q |
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||||||||||||||||| |||||||||||| | ||| | ||||| |||| ||| ||||||||||||||||| || |||||| |||||||||||| ||| |
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| T |
1033956 |
gagaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatcaatgctatagcagataatagggcagatcttgttgtttat |
1034055 |
T |
|
| Q |
238 |
gaccgttttattcatagctaatccagatttgccaaagag |
276 |
Q |
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| T |
1034056 |
ggtcg-tttgttcttagcgaatccagatttgccgaagag |
1034093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 1065838 - 1065897
Alignment:
| Q |
15 |
attggggctttacatggttaatgccctcaataaatatggtattttgtattgtcatatggt |
74 |
Q |
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|||||| ||||| ||||| |||||||||||||||||||||||| | || ||||||||||| |
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| T |
1065838 |
attgggactttatatggtcaatgccctcaataaatatggtattctttactgtcatatggt |
1065897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 1071565 - 1071624
Alignment:
| Q |
15 |
attggggctttacatggttaatgccctcaataaatatggtattttgtattgtcatatggt |
74 |
Q |
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|||||| ||||| ||||||||||||||||||||||| |||||| | |||||||| ||||| |
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| T |
1071565 |
attgggactttatatggttaatgccctcaataaatacggtattctttattgtcacatggt |
1071624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 1058746 - 1058805
Alignment:
| Q |
15 |
attggggctttacatggttaatgccctcaataaatatggtattttgtattgtcatatggt |
74 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||||||||||||||| | || |||||| |||| |
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| T |
1058746 |
attgggactttatatggctaatgccctcaataaatatggtattctttactgtcatgtggt |
1058805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 1640625 - 1640502
Alignment:
| Q |
113 |
aatgtcttcacaacttggtgccagcgagaaaggctttcaatgacactttcatggttaccggaagctatgaaagactagacgggatcaatgctatagctga |
212 |
Q |
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| T |
1640625 |
aatgtcttcacagcttggtgccaatgagaaaagccttcaatggaacttttatagttgccggaggctattcgcgacaagatgggattgatgccatagttga |
1640526 |
T |
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| Q |
213 |
aaataggccagatcttgttgctta |
236 |
Q |
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||||| | |||||||||||||||| |
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| T |
1640525 |
aaataagacagatcttgttgctta |
1640502 |
T |
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