View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17453_low_24 (Length: 290)
Name: NF17453_low_24
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 2 - 278
Target Start/End: Original strand, 53251379 - 53251655
Alignment:
| Q |
2 |
tgctagagaattactgcttccattaaccttgacagagccattttgttgattacttttctcatcaaccgcgtctttcttgcaactcagtgcatctcttaga |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53251379 |
tgctagagaattactgcttccattaaccttgacagagccattttgttgattacttttctcatcaaccgcgtctttcttgcaactcagtgcatctcttaga |
53251478 |
T |
|
| Q |
102 |
gcttccgcttgctctaacacctctttaccttccattttctcacacacacctctcaattgttcaatatcaaatgacatgcaaagctcttctacgggatcga |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53251479 |
gcttccgcttgctctaacacctctttaccttccattttctcacacaaacctctcaattgttctatatcaaatgacatgcaaagctcttctacgggatcga |
53251578 |
T |
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| Q |
202 |
ccaacactgcatgagcctcttggattgccttaaaattaacatctatttcaatcttctttgcctttttcgcagcttca |
278 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53251579 |
ccaacactgcataagcctcttggattgccttaaaattaacatctatttcaatcttctttgcctttttcgcagcttca |
53251655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 53236960 - 53237152
Alignment:
| Q |
1 |
ctgctagagaattactgcttccattaaccttgacagagccattttgttgattacttttctcatcaaccgcgtctttcttgcaactcagtgcatctcttag |
100 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
53236960 |
ctgctagagaactactgcttccattagccttgacagagccattttgttgattacttttctcatcaaccacgtttttcttgcaactcagtgcatctcttag |
53237059 |
T |
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| Q |
101 |
agcttccgcttgctctaacacctctttaccttccattttctcacacacacctctcaattgttcaatatcaaatgacatgcaaagctcttctac |
193 |
Q |
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| T |
53237060 |
agcttctacttgctcagacacctctttgccttccattttctcacacaaacccctcaattgttcaatatcaaatgacatgcaaagctcttctac |
53237152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 191 - 278
Target Start/End: Original strand, 53237804 - 53237891
Alignment:
| Q |
191 |
tacgggatcgaccaacactgcatgagcctcttggattgccttaaaattaacatctatttcaatcttctttgcctttttcgcagcttca |
278 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
53237804 |
tacgggatccaccaacactgcataagcctcttggattgccttaaaatgaacatctatttcaatcttctttgcctctttcgcagcttca |
53237891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 44741044 - 44741236
Alignment:
| Q |
1 |
ctgctagagaattactgcttccattaaccttgacagagccattttgttgattacttttctcatcaaccgcgtctttcttgcaactcagtgcatctcttag |
100 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
44741044 |
ctgctagagaactactgcttccattaaccttgacagagccattttgttgattacttttctcatcaaccacgtctttcttgcaactcagtgcgtctcttag |
44741143 |
T |
|
| Q |
101 |
agcttccgcttgctctaacacctctttaccttccattttctcacacacacctctcaattgttcaatatcaaatgacatgcaaagctcttctac |
193 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44741144 |
agcttccgcttgttctaacacctctttgccttccattttctcacacaaacccctcaattgttcaatatcaaatgacatgcaaagctcttctac |
44741236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 191 - 278
Target Start/End: Original strand, 44741888 - 44741975
Alignment:
| Q |
191 |
tacgggatcgaccaacactgcatgagcctcttggattgccttaaaattaacatctatttcaatcttctttgcctttttcgcagcttca |
278 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
44741888 |
tacgggatccaccaacactgcataagcctcttggattgccttaaaatgaacatctatttcaatcttctttgcctctttcgcagcttca |
44741975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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