View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17453_low_27 (Length: 269)
Name: NF17453_low_27
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 44918166 - 44917918
Alignment:
| Q |
16 |
actcttaatgttagttgaagaatgagaactcaccaacgcgtgtttgtggatgattaagtgcaatgcgcttgtagacactacgccaattaggtttagcaaa |
115 |
Q |
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| T |
44918166 |
actcttaatgttagttgaagaatgagaactcaccaacgcgtgtttgtggatgattaagtgcaatgcgcttgtagacactacgccaattaggtttagcaaa |
44918067 |
T |
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| Q |
116 |
gtgagacttgacgcgtgttccagagacgatatccacaccatttttagcatgattaagtgattggagcatagcaataagagcagagcgagcatcaccctct |
215 |
Q |
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| T |
44918066 |
gtgagacttgacgcgtgttccagagacgatatccacaccatttttagcatgattaagtgattggagcatagcaataagagcagagcgagcatcaccctct |
44917967 |
T |
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| Q |
216 |
tcataaacactagtacaataattgtgtagctcaattactcccctatgat |
264 |
Q |
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| T |
44917966 |
tcataaacactagtacaataattgtgtagctcaattactcccctatgat |
44917918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 41 - 229
Target Start/End: Complemental strand, 44901391 - 44901203
Alignment:
| Q |
41 |
gaactcaccaacgcgtgtttgtggatgattaagtgcaatgcgcttgtagacactacgccaattaggtttagcaaagtgagacttgacgcgtgttccagag |
140 |
Q |
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| T |
44901391 |
gaactcaccaatgcgtttttgtggatgattaagtgcaatgcgcttgtagacgctgcaccattttggtctagcaaagtgagacttgacgggtgttccagtc |
44901292 |
T |
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| Q |
141 |
acgatatccacaccatttttagcatgattaagtgattggagcatagcaataagagcagagcgagcatcaccctcttcataaacactagt |
229 |
Q |
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| T |
44901291 |
aagatatccacaccatttttagcatggtttagtgattgaagcatagcaataagagcagattgagcatcaccgtcttcatatacactagt |
44901203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 44892747 - 44892525
Alignment:
| Q |
32 |
gaagaatgagaactcaccaacgcgtgtttgtggatgattaagtgcaatgcgcttgtagacactacgccaattaggtttagcaaagtgagacttgacgcgt |
131 |
Q |
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| T |
44892747 |
gaagaataggaactcaccaatgcgtttttgtggatgattatttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgcgatgggt |
44892648 |
T |
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| Q |
132 |
gttccagagacgatatccacaccatttttagcatgattaagtgattggagcatagcaataagagcagagcgagcatcaccctcttcataaacactagtac |
231 |
Q |
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| T |
44892647 |
gttccatttaagatatccaaaccttctttagcatggtttagtgattgaaggacagtaacaagagcagagcgagcatcaccgtcttcatatacactagtca |
44892548 |
T |
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| Q |
232 |
aataattgtgtagctcaattact |
254 |
Q |
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| | | |||||| |||||||||| |
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| T |
44892547 |
agtgactgtgtatctcaattact |
44892525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 259
Target Start/End: Complemental strand, 39985802 - 39985584
Alignment:
| Q |
41 |
gaactcaccaacgcgtgtttgtggatgattaagtgcaatgcgcttgtagacactacgccaattaggtttagcaaagtgagacttgacgcgtgttccagag |
140 |
Q |
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| T |
39985802 |
gaactcaccaacttgtgcttccggatgattaagtgcaatgcgtttgtagacagtgcgccaattgggtttagcaaaatgagacatgacacgagtgccggac |
39985703 |
T |
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| Q |
141 |
acgatatccacaccatttttagcatgattaagtgattggagcatagcaataagagcagagcgagcatcaccctcttcataaacactagtacaataattgt |
240 |
Q |
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| T |
39985702 |
acaacatccaccccgtgctttgcatggtttatagactgcaccatagcgataagagcagagcgtgcatcaccctgttcgtaaacactggtgcagtagctgt |
39985603 |
T |
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| Q |
241 |
gtagctcaattactcccct |
259 |
Q |
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| T |
39985602 |
gtagctcaatcaatcccct |
39985584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 37068704 - 37068594
Alignment:
| Q |
146 |
atccacaccatttttagcatgattaagtgattggagcatagcaataagagcagagcgagcatcaccctcttcataaacactagtacaataattgtgtagc |
245 |
Q |
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| T |
37068704 |
atccacaccatttttggcatggtgaagggactgaagcattgtgatcaaagccgaacgagcgtcgccttcttcataaacacttgtacaataattgtgaagc |
37068605 |
T |
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| Q |
246 |
tcaattactcc |
256 |
Q |
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| T |
37068604 |
tcaattactcc |
37068594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 46560312 - 46560406
Alignment:
| Q |
144 |
atatccacaccatttttagcatgattaagtgattggagcatagcaataagagcagagcgagcatcaccctcttcataaacactagtacaataatt |
238 |
Q |
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| T |
46560312 |
atatccacaccacttttggcatgatgaagtgattgaagcatagtgatcaaagctgatctagcatctccttcttcatacacacttgtgcaataatt |
46560406 |
T |
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