View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17453_low_32 (Length: 253)
Name: NF17453_low_32
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 4775713 - 4775844
Alignment:
| Q |
1 |
atgataatctatggcaatatgcttcatcctagagtactgaaagacagggtttgcacatagagatgtagctccaatgttttctaagaatattgttggtgcc |
100 |
Q |
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| T |
4775713 |
atgataatctatggcaatatgcttcatcctagagt---gaaagacagggtttgcacatagatatgtagctccaatgttgtcttagaatattgttggtgca |
4775809 |
T |
|
| Q |
101 |
gttaatggaatttgaagttcttgtaacaagttttg |
135 |
Q |
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| T |
4775810 |
gttaatggaatttgaagttcttgtaacaagttttg |
4775844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 43061074 - 43061205
Alignment:
| Q |
1 |
atgataatctatggcaatatgcttcatcctagagtactgaaagacagggtttgcacatagagatgtagctccaatgttttctaagaatattgttggtgcc |
100 |
Q |
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|||||||||||||||||| || ||||||||| ||| |||| |||||||||||||||||| ||||||||| |||||| ||| ||||||| |||||||| |
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| T |
43061074 |
atgataatctatggcaatgtgtttcatcctatagt---gaaaaacagggtttgcacatagatatgtagctctaatgttgtctgagaatatcgttggtgca |
43061170 |
T |
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| Q |
101 |
gttaatggaatttgaagttcttgtaacaagttttg |
135 |
Q |
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| T |
43061171 |
gttaatggaatttgaagttcttgtaacaagttttg |
43061205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 45192914 - 45192874
Alignment:
| Q |
38 |
tgaaagacagggtttgcacatagagatgtagctccaatgtt |
78 |
Q |
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| T |
45192914 |
tgaaggacagggtttgcacatagatatgtagctccaatgtt |
45192874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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