View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17453_low_38 (Length: 211)
Name: NF17453_low_38
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 29036843 - 29037025
Alignment:
| Q |
11 |
tagcatagggaatatattgattatacatggcatcaatggaagacatcaacatgtgtactgagcaaattacacttccaggattcagatttcaccccacaga |
110 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29036843 |
tagcatagagaatatattgattatacatggcatcaatggaagacatcaacatgtgtactgagcaaattacacttccaggattcagatttcaccccacaga |
29036942 |
T |
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| Q |
111 |
agaagaactccttgatttctatcttaaaaatatggttgttggcaaaaaacttcgttatgatgtcattggttttctcaatatct |
193 |
Q |
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| T |
29036943 |
agaagaactccttgatttctatcttaagaatatggttgttggcaaaaaacttcgttatgatgtcattggttttctcaatatct |
29037025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 29048979 - 29049161
Alignment:
| Q |
11 |
tagcatagggaatatattgattatacatggcatcaatggaagacatcaacatgtgtactgagcaaattacacttccaggattcagatttcaccccacaga |
110 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29048979 |
tagcatagagaatatattgattatacatggcatcaatggaagacatcaacatgtgtactgagcaaattacacttccaggattcagatttcaccccacaga |
29049078 |
T |
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| Q |
111 |
agaagaactccttgatttctatcttaaaaatatggttgttggcaaaaaacttcgttatgatgtcattggttttctcaatatct |
193 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29049079 |
agaagaactccttgatttctatcttaagaatatggttgttggcaaaaaacttcgttatgatgtcattggttttctcaatatct |
29049161 |
T |
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