View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17453_low_6 (Length: 415)

Name: NF17453_low_6
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17453_low_6
NF17453_low_6
[»] chr1 (11 HSPs)
chr1 (221-415)||(7607959-7608155)
chr1 (221-415)||(31770947-31771143)
chr1 (79-197)||(31771310-31771428)
chr1 (79-201)||(7608318-7608440)
chr1 (133-226)||(7608224-7608317)
chr1 (133-226)||(31771212-31771305)
chr1 (79-136)||(1721556-1721613)
chr1 (69-136)||(17726023-17726089)
chr1 (78-123)||(32440659-32440704)
chr1 (78-136)||(22368196-22368254)
chr1 (381-415)||(14184848-14184882)
[»] scaffold0003 (5 HSPs)
scaffold0003 (262-390)||(36664-36794)
scaffold0003 (262-381)||(42852-42976)
scaffold0003 (79-175)||(36966-37062)
scaffold0003 (74-114)||(43199-43239)
scaffold0003 (224-263)||(36837-36876)
[»] chr6 (4 HSPs)
chr6 (262-381)||(27444385-27444509)
chr6 (68-113)||(31444760-31444805)
chr6 (74-114)||(27444122-27444162)
chr6 (73-121)||(33054175-33054223)
[»] chr3 (16 HSPs)
chr3 (291-386)||(31688156-31688252)
chr3 (291-390)||(31896611-31896711)
chr3 (291-390)||(31912320-31912420)
chr3 (291-390)||(31945968-31946068)
chr3 (74-153)||(19766009-19766088)
chr3 (68-123)||(11394007-11394062)
chr3 (11-66)||(11427105-11427160)
chr3 (90-175)||(31687881-31687966)
chr3 (224-264)||(31688056-31688096)
chr3 (79-123)||(46233973-46234017)
chr3 (224-264)||(31896771-31896811)
chr3 (224-264)||(31912480-31912520)
chr3 (323-362)||(952782-952821)
chr3 (73-136)||(52130783-52130846)
chr3 (262-295)||(52131084-52131117)
chr3 (224-264)||(31946128-31946168)
[»] scaffold0152 (1 HSPs)
scaffold0152 (79-175)||(10195-10291)
[»] chr2 (5 HSPs)
chr2 (65-136)||(997806-997877)
chr2 (78-153)||(4453777-4453852)
chr2 (78-123)||(9208569-9208614)
chr2 (74-113)||(7161811-7161850)
chr2 (69-132)||(3625169-3625234)
[»] chr4 (6 HSPs)
chr4 (69-136)||(32651267-32651334)
chr4 (69-153)||(38467690-38467775)
chr4 (81-153)||(3649873-3649945)
chr4 (71-134)||(41810163-41810226)
chr4 (79-114)||(26720237-26720272)
chr4 (381-415)||(41810334-41810368)
[»] scaffold0014 (1 HSPs)
scaffold0014 (72-114)||(32608-32650)
[»] chr8 (2 HSPs)
chr8 (79-153)||(44663663-44663737)
chr8 (79-153)||(35348991-35349066)
[»] chr7 (2 HSPs)
chr7 (74-123)||(16262692-16262741)
chr7 (79-121)||(21820186-21820228)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 221 - 415
Target Start/End: Complemental strand, 7608155 - 7607959
Alignment:
Q  221 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||    
T  7608155 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctccatctctctacgattcctcatcttcttcaaaaacacacaaaa 7608056  T
Q  319 tcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcggaaaactgatgttattatcacacctctc 415  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  7608055 tcctttcttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgtgtcggaaaactgctgttattatcacacctctc 7607959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 221 - 415
Target Start/End: Complemental strand, 31771143 - 31770947
Alignment:
Q  221 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  |||    
T  31771143 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctcttcatctctctacgattcctcatcttcttcaaaaacacacaaaa 31771044  T
Q  319 tcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcggaaaactgatgttattatcacacctctc 415  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31771043 tcatttcttcttcttctgccttcatttcgaccttctaaagtaaatgcatcatcgttgaccaccgcgttggaaaactgatgttattatcacacctctc 31770947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 31771428 - 31771310
Alignment:
Q  79 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatc 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  31771428 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctgttttaggcgccaacaaacctcagcccttggatctaatc 31771329  T
Q  179 tgtttgccattttttcctc 197  Q
    ||||||| |||||||||||    
T  31771328 tgtttgcaattttttcctc 31771310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 79 - 201
Target Start/End: Complemental strand, 7608440 - 7608318
Alignment:
Q  79 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatc 178  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  7608440 atctaacttattcctaatcctagttaaaactccaaataacactcccaaccctaattctcctgttttaggcgccaacaaatctcagcccttggatctaatc 7608341  T
Q  179 tgtttgccattttttcctccttt 201  Q
    ||||||| |||||||||||||||    
T  7608340 tgtttgcaattttttcctccttt 7608318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 7608317 - 7608224
Alignment:
Q  133 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 226  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7608317 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 7608224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 31771305 - 31771212
Alignment:
Q  133 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 226  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31771305 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccagtttttcctcctttcttacgtgacaaaattaattgtatt 31771212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 1721556 - 1721613
Alignment:
Q  79 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 136  Q
    |||||||||||||||||||||| |||||||||||| |||| || ||||||||||||||    
T  1721556 atctaacttattcctaatcctaattaacactccaattaacgctgccaaccctaattct 1721613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 17726023 - 17726089
Alignment:
Q  69 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 136  Q
    |||||||||||||||| |||||||||||||||||||||||||||| || ||||   ||||||||||||    
T  17726023 atctaatctaatctaa-ttattcctaatcctagttaacactccaattatcacttaaaaccctaattct 17726089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 32440704 - 32440659
Alignment:
Q  78 aatctaacttattcctaatcctagttaacactccaaataacactcc 123  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  32440704 aatctaacttattcctaatcctagttaacactccaattatcactcc 32440659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 22368254 - 22368196
Alignment:
Q  78 aatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 136  Q
    |||||||||||||||||||||||||||||||| ||| || ||||   ||||||||||||    
T  22368254 aatctaacttattcctaatcctagttaacacttcaattatcacttaaaaccctaattct 22368196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 415
Target Start/End: Original strand, 14184848 - 14184882
Alignment:
Q  381 cgcgtcggaaaactgatgttattatcacacctctc 415  Q
    ||||| |||||||||||||||||||||||||||||    
T  14184848 cgcgtaggaaaactgatgttattatcacacctctc 14184882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 100; Significance: 2e-49; HSPs: 5)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 262 - 390
Target Start/End: Complemental strand, 36794 - 36664
Alignment:
Q  262 taaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagt 359  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||| || ||||||||||||||||||||||||||||||||||    
T  36794 taaccctcctttctctccatctctctacgattcctcatcttcttcaaaaacacacaaaatccctttttcttcttctgccttcatttcgaccctctaaagt 36695  T
Q  360 aaatgcatcatcgttgaccaccgcgtcggaa 390  Q
    ||||||||||||||||| |||||||| ||||    
T  36694 aaatgcatcatcgttgatcaccgcgttggaa 36664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 262 - 381
Target Start/End: Complemental strand, 42976 - 42852
Alignment:
Q  262 taaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaatcctttcttcttcttct---gccttcatttcgaccctctaa 356  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||| |||||||||||||   |||||||||||||||||||||    
T  42976 taaccctcctttctctccatctctctacgattcctcgtcttcttcaaaaacacacaaaatcccttcttcttcttcttctgccttcatttcgaccctctaa 42877  T
Q  357 agtaaatgcatcatcgttgaccacc 381  Q
    |||||||||||||||||||||||||    
T  42876 agtaaatgcatcatcgttgaccacc 42852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 37062 - 36966
Alignment:
Q  79 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 175  Q
    |||||||||||||||||||||| |||||||||||| ||||||| | || ||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  37062 atctaacttattcctaatcctaattaacactccaattaacacttcaaatcctaattcttcttttttaggcgccaaacaatcct-agcccttggatcta 36966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 43239 - 43199
Alignment:
Q  74 atctaatctaacttattcctaatcctagttaacactccaaa 114  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  43239 atctaatctaacttattcctaatcgtagttaacactccaaa 43199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 36876 - 36837
Alignment:
Q  224 attgtaaatgacaaataattaatgttattggtttccaata 263  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  36876 attgtaaatgacaaataattaatgttatcggtttccaata 36837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 262 - 381
Target Start/End: Original strand, 27444385 - 27444509
Alignment:
Q  262 taaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaatcctttct---tcttcttctgccttcatttcgaccctctaa 356  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||| ||||   ||||||||||||||||||||||||||||||    
T  27444385 taaccctcctttctctccatctctctacgattcctcgtcttcttcaaaaacacacaaaatcccttcttcttcttcttctgccttcatttcgaccctctaa 27444484  T
Q  357 agtaaatgcatcatcgttgaccacc 381  Q
    |||||||||||||||||||||||||    
T  27444485 agtaaatgcatcatcgttgaccacc 27444509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 31444760 - 31444805
Alignment:
Q  68 tatctaatctaatctaacttattcctaatcctagttaacactccaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31444760 tatctaatctaatctaacttattcctaatcctagttaacactccaa 31444805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 27444122 - 27444162
Alignment:
Q  74 atctaatctaacttattcctaatcctagttaacactccaaa 114  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  27444122 atctaatctaacttattcctaatcgtagttaacactccaaa 27444162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 33054223 - 33054175
Alignment:
Q  73 aatctaatctaacttattcctaatcctagttaacactccaaataacact 121  Q
    |||||||||||||||||||||||||||| |||||||| ||| |||||||    
T  33054223 aatctaatctaacttattcctaatcctaattaacactacaattaacact 33054175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 291 - 386
Target Start/End: Original strand, 31688156 - 31688252
Alignment:
Q  291 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtc 386  Q
    ||||||||| |||||||||||||||  |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31688156 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtc 31688252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 291 - 390
Target Start/End: Complemental strand, 31896711 - 31896611
Alignment:
Q  291 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 388  Q
    ||||||||| |||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31896711 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 31896613  T
Q  389 aa 390  Q
    ||    
T  31896612 aa 31896611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 291 - 390
Target Start/End: Complemental strand, 31912420 - 31912320
Alignment:
Q  291 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 388  Q
    ||||||||| |||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31912420 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 31912322  T
Q  389 aa 390  Q
    ||    
T  31912321 aa 31912320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 291 - 390
Target Start/End: Complemental strand, 31946068 - 31945968
Alignment:
Q  291 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 388  Q
    ||||||||| |||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31946068 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 31945970  T
Q  389 aa 390  Q
    ||    
T  31945969 aa 31945968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 19766009 - 19766088
Alignment:
Q  74 atctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 153  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| || || ||||||| |||||    
T  19766009 atctaatctaacttatttctaatcctagttaacactccaattaacactccaaaccctaatcctacttttttaggcgccaa 19766088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 11394007 - 11394062
Alignment:
Q  68 tatctaatctaatctaacttattcctaatcctagttaacactccaaataacactcc 123  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| || ||||||    
T  11394007 tatctaatctaatctaacttatttctaatcctagttaacactccaattatcactcc 11394062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 11427160 - 11427105
Alignment:
Q  11 acatcatcttcatagtatcaagatgcaaaactaattacattttgcaatcaggtaat 66  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  11427160 acatcattttcatggtatcaagatgcaaaactaattatattttgcaatcaggtaat 11427105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 31687881 - 31687966
Alignment:
Q  90 tcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 175  Q
    ||||| |||||||||||||||||| | ||||||| |||||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  31687881 tcctagtcctagttaacactccaacttacactccaaaccctaattctacttttttaggcgccaaacaatcct-agcccttggatcta 31687966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 31688056 - 31688096
Alignment:
Q  224 attgtaaatgacaaataattaatgttattggtttccaataa 264  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  31688056 attgtaaatgacaaataattaatgttatcggtttccaataa 31688096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 46234017 - 46233973
Alignment:
Q  79 atctaacttattcctaatcctagttaacactccaaataacactcc 123  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  46234017 atctaacttattcctaatcctagttaacactccaattatcactcc 46233973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 31896811 - 31896771
Alignment:
Q  224 attgtaaatgacaaataattaatgttattggtttccaataa 264  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  31896811 attgtaaatgacaaataattaatgttatcgatttccaataa 31896771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 31912520 - 31912480
Alignment:
Q  224 attgtaaatgacaaataattaatgttattggtttccaataa 264  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  31912520 attgtaaatgacaaataattaatgttatcgatttccaataa 31912480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 362
Target Start/End: Complemental strand, 952821 - 952782
Alignment:
Q  323 ttcttcttcttctgccttcatttcgaccctctaaagtaaa 362  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  952821 ttcttcttcttctgccttcatttcaatcctctaaagtaaa 952782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 52130783 - 52130846
Alignment:
Q  73 aatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 136  Q
    |||||| ||||||||||| |||||||||| ||||||||||| || ||||   ||||||||||||    
T  52130783 aatctagtctaacttatttctaatcctaggtaacactccaattaccacttaaaaccctaattct 52130846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 295
Target Start/End: Original strand, 52131084 - 52131117
Alignment:
Q  262 taaccctcctttctctccatctctctacgattcc 295  Q
    |||||||||| |||||||||||||||||||||||    
T  52131084 taaccctcctctctctccatctctctacgattcc 52131117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 31946168 - 31946128
Alignment:
Q  224 attgtaaatgacaaataattaatgttattggtttccaataa 264  Q
    ||||||||||||||||||| |||||||| | ||||||||||    
T  31946168 attgtaaatgacaaataatgaatgttatcgatttccaataa 31946128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 10195 - 10291
Alignment:
Q  79 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 175  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  10195 atctaacttattcccaatcctagttaacactccaattaacactccaaaccctaattctacttttttaggcgccaaacaatcct-agcccttggatcta 10291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 997806 - 997877
Alignment:
Q  65 atctatctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| || | || ||||||||||||||    
T  997806 atctatctaatctaatctaacttattcctaatcctagttaacacttcaattagccctgccaaccctaattct 997877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 4453777 - 4453852
Alignment:
Q  78 aatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 153  Q
    |||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||   |||||||| |||||    
T  4453777 aatctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatgattttaggcgccaa 4453852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 9208569 - 9208614
Alignment:
Q  78 aatctaacttattcctaatcctagttaacactccaaataacactcc 123  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  9208569 aatctaacttattcctaatcctagttaacactccaattatcactcc 9208614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 7161811 - 7161850
Alignment:
Q  74 atctaatctaacttattcctaatcctagttaacactccaa 113  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7161811 atctaatctaacttatttctaatcctagttaacactccaa 7161850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 3625169 - 3625234
Alignment:
Q  69 atctaatctaa--tctaacttattcctaatcctagttaacactccaaataacactcccaaccctaa 132  Q
    |||||||||||  ||||||||||||||||||||| |||||||||||| ||||  | ||||||||||    
T  3625169 atctaatctaacttctaacttattcctaatcctaattaacactccaattaaccatgccaaccctaa 3625234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 32651334 - 32651267
Alignment:
Q  69 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||    
T  32651334 atctaatctaatctaacttattcctaatcctagttaacactccaattatcacttaaaaccctaattct 32651267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 38467775 - 38467690
Alignment:
Q  69 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct-cctattttaggtgccaa 153  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| |||||||   |||||||||||| | ||||||||| |||||    
T  38467775 atctaatctaatctaacttatttataatcctagttaacactccaattaacacttaaaaccctaattctacttattttaggcgccaa 38467690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 3649873 - 3649945
Alignment:
Q  81 ctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 153  Q
    ||||||||||||||||||||||||||||||||| |||||||   |||||||| ||| || ||||||| |||||    
T  3649873 ctaacttattcctaatcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaa 3649945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 41810163 - 41810226
Alignment:
Q  71 ctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaatt 134  Q
    |||||||||||||||||||| |||||||||||||||||||||| || ||||   ||||||||||    
T  41810163 ctaatctaatctaacttatttctaatcctagttaacactccaattaccacttaaaaccctaatt 41810226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 114
Target Start/End: Original strand, 26720237 - 26720272
Alignment:
Q  79 atctaacttattcctaatcctagttaacactccaaa 114  Q
    ||||||||||||||||||||||||||||||||||||    
T  26720237 atctaacttattcctaatcctagttaacactccaaa 26720272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 415
Target Start/End: Original strand, 41810334 - 41810368
Alignment:
Q  381 cgcgtcggaaaactgatgttattatcacacctctc 415  Q
    |||||||||||||||||||||||||||||||||||    
T  41810334 cgcgtcggaaaactgatgttattatcacacctctc 41810368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 32608 - 32650
Alignment:
Q  72 taatctaatctaacttattcctaatcctagttaacactccaaa 114  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  32608 taatctaatctaacttatttctaatcctagttaacactccaaa 32650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 44663737 - 44663663
Alignment:
Q  79 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 153  Q
    ||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||   |||||||| |||||    
T  44663737 atctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatgattttaggcgccaa 44663663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 35348991 - 35349066
Alignment:
Q  79 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct-cctattttaggtgccaa 153  Q
    |||||||||||| |||||||||||||||||||||| |||||||   || ||||||||| | ||||||||| |||||    
T  35348991 atctaacttatttctaatcctagttaacactccaattaacacttaaaatcctaattctacttattttaggcgccaa 35349066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 16262741 - 16262692
Alignment:
Q  74 atctaatctaacttattcctaatcctagttaacactccaaataacactcc 123  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||    
T  16262741 atctaatctaacttattcctaatcctagttaacacttcaattatcactcc 16262692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 21820228 - 21820186
Alignment:
Q  79 atctaacttattcctaatcctagttaacactccaaataacact 121  Q
    |||||||||||||||||||||| |||||||||||| |||||||    
T  21820228 atctaacttattcctaatcctaattaacactccaattaacact 21820186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University