View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17453_low_7 (Length: 400)
Name: NF17453_low_7
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 48569183 - 48569421
Alignment:
| Q |
1 |
ggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagcctaatgaagaccattcaggatcctcatcttttaaggtat |
100 |
Q |
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| T |
48569183 |
ggagatctctccaatacctttttggttggaaatgctccaatggcccatatggttgttcagcctaatgaagaccattcaggatcctcatcttttaaggtat |
48569282 |
T |
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| Q |
101 |
attcatggaaaattatggtactttggtctactcttggaaggttgacatcttct-gaaataccttcaaggcatttcctttctttggttgtaccacagcctt |
199 |
Q |
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| T |
48569283 |
attcatagaaaattatggtactttggtctactcttggaaggttgacatcttctggaaataccttcaaggcatttcctttctttggttgtaccacagcctt |
48569382 |
T |
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| Q |
200 |
tccaatacttctgttttctgtgtgaaaattgattatgaatt |
240 |
Q |
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| T |
48569383 |
tccaatacttctgttttc--tgtgaaaattgattatgaatt |
48569421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 265 - 400
Target Start/End: Original strand, 48569420 - 48569549
Alignment:
| Q |
265 |
ttcctttgctgaaatcttccgatagaaattcttcgtcatgatcaagtcccaagtaattgctaaaaacaagtttgactttagaaaatgcgaggattttgtt |
364 |
Q |
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| T |
48569420 |
ttcctttgctgaaatcttccgatataaattcttcttca------agtcccaagtaattgctaaaaacaagtttgactttagaaaatgcgaggattttgtt |
48569513 |
T |
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| Q |
365 |
tgggtgacagaggatgaattgatggagtattttccc |
400 |
Q |
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| T |
48569514 |
tgggtgacaaaggatgaattgatggagtattttccc |
48569549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 247 - 399
Target Start/End: Complemental strand, 10821612 - 10821466
Alignment:
| Q |
247 |
attatacttgctcattttttcctttgctgaaatcttccgatagaaattcttcgtcatgatcaagtcccaagtaattgctaaaaacaagtttgactttaga |
346 |
Q |
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| T |
10821612 |
attatacttgctcattctttcctttgcttaaatcttctgtcagaaattcttcttca------aatcacaagtaattgctaaaaacaagttcgacattggc |
10821519 |
T |
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| Q |
347 |
aaatgcgaggattttgtttgggtgacagaggatgaattgatggagtattttcc |
399 |
Q |
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| T |
10821518 |
aaatgcgaggactttgtttgggtgactaaggatgaattgattgagtattttcc |
10821466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 10821901 - 10821749
Alignment:
| Q |
1 |
ggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagcctaatgaagaccattcaggatcctcatcttttaaggtat |
100 |
Q |
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| T |
10821901 |
ggagatctttcgaatacatattttgtcggaaatgctccgatggcccatacggttgttcagcctaaagaagagcagacaggatcaacatcttttaaggtat |
10821802 |
T |
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| Q |
101 |
attcatggaaaa--ttatggtactttggtctactcttggaaggttgacatctt |
151 |
Q |
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| T |
10821801 |
gtttaaaggaaattttgtggtacttcaatctactattggaaggttgacatctt |
10821749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 36145485 - 36145584
Alignment:
| Q |
1 |
ggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagcctaatgaagaccattcaggatcctcatcttttaaggtat |
100 |
Q |
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| T |
36145485 |
ggagatctttcaaatacatattttgtcggaaatgctccgatggcccatattgttgttcagcctaaagaagagcagacaggatcaacatcttttaaggtat |
36145584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 399
Target Start/End: Original strand, 36145837 - 36145922
Alignment:
| Q |
314 |
caagtaattgctaaaaacaagtttgactttagaaaatgcgaggattttgtttgggtgacagaggatgaattgatggagtattttcc |
399 |
Q |
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| T |
36145837 |
caagtaattgctaaaaacaagttcgacattggcaaaggtgaggactttgtttgggtgactaaggatgaattgatggagtattttcc |
36145922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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