View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17453_low_8 (Length: 373)
Name: NF17453_low_8
Description: NF17453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17453_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 356
Target Start/End: Complemental strand, 28865772 - 28865422
Alignment:
| Q |
7 |
aatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttctgtgcaaatatattttagtctttaccaacgatagaa |
106 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |
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| T |
28865772 |
aatatactcttaatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttttgcgcaaatttattttagtctttaccaacgatagaa |
28865673 |
T |
|
| Q |
107 |
gctcctgcactaccagtggttcactacttagtgctgcaatgtgtaaaatagtgtttcctgcctcatccttctcgtttaatattctactctccagctcttt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28865672 |
gctcctgcactaccagtggttcactacttagtgctgcaacatgtaaaatactgtttcctgcctcatccttctcgtttaatattctactctccagctcttc |
28865573 |
T |
|
| Q |
207 |
agcgccactccgttcannnnnnncgagccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgaagt-ggggtctcacgcct |
305 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |
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| T |
28865572 |
agcgccactccgttcatttttttcgagccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgcagtgggggtctcacacct |
28865473 |
T |
|
| Q |
306 |
cacagtccgatattcaatggattctggacacaataagagaaagtgagctaa |
356 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28865472 |
cacagtccaatcttcaatggattctggacacaataagagaaagtgagctaa |
28865422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 356
Target Start/End: Complemental strand, 15329675 - 15329326
Alignment:
| Q |
7 |
aatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttctgtgcaaatatattttagtctttaccaacgatagaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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|
| T |
15329675 |
aatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttttgtgcaaatttattttagtctttaccaacgatagaa |
15329576 |
T |
|
| Q |
107 |
gctcctgcactaccagtggttcactacttagtgctgcaatgtgtaaaatagtgtttcctgcctcatccttctcgtttaatattctactctccagctcttt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| | ||||||| |
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|
| T |
15329575 |
gctcctgcactaccagtggttcactacttagtgctgcaatgtgtaaaattgtgtttcctgcctcatccctctcgtttaatattctactcttccgctcttt |
15329476 |
T |
|
| Q |
207 |
agcgccactccgttcannnnnnncgagccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgaagtggggtctcacgcctc |
306 |
Q |
| |
|
|||||| ||||||| | ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |||| |
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|
| T |
15329475 |
agcgcccctccgtttatttttttcgagccacccaacaagcacttgaaaggactcaaattgttcattcttaatagcaatatgcagtggggtctcgcacctc |
15329376 |
T |
|
| Q |
307 |
acagtccgatattcaatggattctggacacaataagagaaagtgagctaa |
356 |
Q |
| |
|
||||||| || ||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
15329375 |
acagtccaatcttcaatggattctggacacgagaagagaaagtgagctaa |
15329326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 356
Target Start/End: Complemental strand, 15510044 - 15509695
Alignment:
| Q |
7 |
aatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttctgtgcaaatatattttagtctttaccaacgatagaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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|
| T |
15510044 |
aatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttttgtgcaaatttattttagtctttaccaacgatagaa |
15509945 |
T |
|
| Q |
107 |
gctcctgcactaccagtggttcactacttagtgctgcaatgtgtaaaatagtgtttcctgcctcatccttctcgtttaatattctactctccagctcttt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| | ||||||| |
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|
| T |
15509944 |
gctcctgcactaccagtggttcactacttagtgctgcaatgtgtaaaattgtgtttcctgcctcatccctctcgtttaatattctactcttccgctcttt |
15509845 |
T |
|
| Q |
207 |
agcgccactccgttcannnnnnncgagccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgaagtggggtctcacgcctc |
306 |
Q |
| |
|
|||||| ||||||| | ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |||| |
|
|
| T |
15509844 |
agcgcccctccgtttatttttttcgagccacccaacaagcacttgaaaggactcaaattgttcattcttaatagcaatatgcagtggggtctcgcacctc |
15509745 |
T |
|
| Q |
307 |
acagtccgatattcaatggattctggacacaataagagaaagtgagctaa |
356 |
Q |
| |
|
||||||| || ||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
15509744 |
acagtccaatcttcaatggattctggacacgagaagagaaagtgagctaa |
15509695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 348
Target Start/End: Complemental strand, 14726824 - 14726707
Alignment:
| Q |
231 |
gagccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgaagtggggtctcacgcctcacagtccgatattcaatggattct |
330 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||| ||||||||||||| ||||||||| |||| ||||| |||| |||||| |||||||||||||| |
|
|
| T |
14726824 |
gagccagccaacaagtacttgaagtgcctcaaactgttcattcttaacagcaatatgcagtgcagtctcctgccttacagtcaagtattcaatggattcc |
14726725 |
T |
|
| Q |
331 |
ggacacaataagagaaag |
348 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
14726724 |
ggacacaataagagaaag |
14726707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 231 - 356
Target Start/End: Complemental strand, 30648395 - 30648270
Alignment:
| Q |
231 |
gagccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgaagtggggtctcacgcctcacagtccgatattcaatggattct |
330 |
Q |
| |
|
|||||| | |||||| ||||||| ||||||| |||||||||| |||| || |||||| |||| ||||| |||||||||||| |||||||| ||||| |
|
|
| T |
30648395 |
gagccagctaacaagtacttgaagggcctcatattgttcatttttaacagaaatatggagtgcagtctcgcgcctcacagtcaagtattcaattgattcc |
30648296 |
T |
|
| Q |
331 |
ggacacaataagagaaagtgagctaa |
356 |
Q |
| |
|
|||||||| |||||||| |||||| |
|
|
| T |
30648295 |
ggacacaaacggagaaagtaagctaa |
30648270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 14727571 - 14727509
Alignment:
| Q |
7 |
aatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattcttt |
69 |
Q |
| |
|
||||||||||| |||||||| |||||| |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
14727571 |
aatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctccaaattcttt |
14727509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 30648708 - 30648656
Alignment:
| Q |
7 |
aatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctc |
59 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| ||||| ||||| |
|
|
| T |
30648708 |
aatatactcttgatctctggcgtgcttgctatgtctaatgcggttttgttctc |
30648656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 26089071 - 26089009
Alignment:
| Q |
7 |
aatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattcttt |
69 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||| ||||| ||||| ||||||| ||||||| |
|
|
| T |
26089071 |
aatatactcttcacatctggagtgcttgctatgtctaatgcggttttgttctccagattcttt |
26089009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 29552272 - 29552206
Alignment:
| Q |
269 |
cattcttaatagcaatatgaagtggggtctcacgcctcacagtccgatattcaatggattctggaca |
335 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| | |||||||||| |||||||| ||||| ||||| |
|
|
| T |
29552272 |
cattattaatagcaatatgaagtgcggtctcgcacctcacagtcaagtattcaatagattcaggaca |
29552206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 338
Target Start/End: Original strand, 6612051 - 6612157
Alignment:
| Q |
232 |
agccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgaagtggggtctcacgcctcacagtccgatattcaatggattctg |
331 |
Q |
| |
|
||||| |||||||| ||| ||| |||||||||||||| |||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
6612051 |
agccagccaacaagtactcgaagggcctcaaattgttgattcttaatagcaatatgcagtgcagtctcgtgcctcacagtcaaatattcaatggattccg |
6612150 |
T |
|
| Q |
332 |
gacacaa |
338 |
Q |
| |
|
||||||| |
|
|
| T |
6612151 |
gacacaa |
6612157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 6611132 - 6611221
Alignment:
| Q |
10 |
atactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttctgtgcaaatatattttagtctttaccaac |
99 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| ||||||||||| ||||||| ||| || ||| ||||| ||||||||||||||||||| |
|
|
| T |
6611132 |
atactcttgatccgtggagtgcttgctatgtctaatgctgttttgctctccaagttcattgtgttcaaatttattttagtctttaccaac |
6611221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 6611950 - 6612008
Alignment:
| Q |
131 |
tacttagtgctgcaatgtgtaaaatagtgtttcctgcctcatccttctcgtttaatatt |
189 |
Q |
| |
|
|||||||||||| ||| || ||||| ||||| |||||||||||| ||| |||||||||| |
|
|
| T |
6611950 |
tacttagtgctgaaatatgcaaaatggtgttgcctgcctcatccctcttgtttaatatt |
6612008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 312
Target Start/End: Original strand, 26087167 - 26087348
Alignment:
| Q |
131 |
tacttagtgctgcaatgtgtaaaatagtgtttcctgcctcatccttctcgtttaatattctactctccagctctttagcgccactccgttcannnnnnnc |
230 |
Q |
| |
|
|||||||||||| || || ||||| ||||| ||||| || ||| ||| ||||||||||| | | ||||||||| |||||| || ||| | | |
|
|
| T |
26087167 |
tacttagtgctgaaacatgcaaaatggtgttgcctgcatcgtccctcttgtttaatattccattttccagctctacagcgcctctttgtttatttgtttc |
26087266 |
T |
|
| Q |
231 |
gagccatccaacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgaagtggggtctcacgcctcacagtc |
312 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||||| | || |||||||| |||||||||| |
|
|
| T |
26087267 |
gagccatccaacaagtacttgaagggcctcatattgttcattcttgatagcaatatgcaatgcggtctcacacctcacagtc |
26087348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 26086678 - 26086740
Alignment:
| Q |
7 |
aatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattcttt |
69 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
26086678 |
aatatactcttgatctttggagtgcttgctatgtctaatgctgttttgttctccaaattcttt |
26086740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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