View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17454_high_10 (Length: 339)
Name: NF17454_high_10
Description: NF17454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17454_high_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 339
Target Start/End: Complemental strand, 48665164 - 48664839
Alignment:
| Q |
13 |
atactcccagattgatgctaggagaacaaagccaagctgcaagaggatatagtttgacaaattatatgcaagtacagagggagggacttatttaaagtcc |
112 |
Q |
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| T |
48665164 |
atactcccagattgatgctaggagaacaaagccaagctgcaagaggatatagtttgacaaattatatgcaagtacagagggagggacttatttaaagtcc |
48665065 |
T |
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| Q |
113 |
aagattatgtaaaacaaagcataaaaaatataacactgaaataggtgataggaacttatcttaccactatccttattgtgatggagactgcatatatctg |
212 |
Q |
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| T |
48665064 |
aagattatgtaaaacaaagcataaaaaatataacactgaaataggtgataggaacttatcttaccactatccttattgtgatggagactgcatatatctg |
48664965 |
T |
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| Q |
213 |
caatcatgacaactataaaatttacttcaaataaataataaaaaatcatgaaatattttaattgagttattagttattactggatattacatttataata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48664964 |
caatcatgacaactataaaatttacttcaaataaataata-aaaatcatgaaatactttaattgagttattagttattactggatattacatttataata |
48664866 |
T |
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| Q |
313 |
actggtggtctgaacaatatatttacc |
339 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
48664865 |
actggtggactgaacaatatatttacc |
48664839 |
T |
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