View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17454_high_12 (Length: 332)
Name: NF17454_high_12
Description: NF17454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17454_high_12 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 4 - 272
Target Start/End: Complemental strand, 18152358 - 18152090
Alignment:
| Q |
4 |
gggtagataatactagcatgtccagtaacccatgtgtggtatttgaaacgtcttcctagttatattgcgagccttttagataaacctcttaaagaattag |
103 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18152358 |
gggtatataaaactagcatgtccagtaacccatgtatggtatttgaaacgtcttcctagttatattgcgagccttttagataaacctcttaaagaattag |
18152259 |
T |
|
| Q |
104 |
aaggtctagtatactgcgatgtgtgatttgataaaaatttttattgtacagatttcaaatgagaaactgtcattccattcaattaaattggaatgtcctc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18152258 |
aaggtctagtatactgcgatgtgtgatttgataaaaattcttattgtacagatttcaaatgagaaactgtcattccattcaattaaattggaatgtcctc |
18152159 |
T |
|
| Q |
204 |
tatctggcatgtctcttgggatgagtaacatgaagctcagaattcatgggtgtattgaatacccccaaa |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18152158 |
tatctggcatgtctcttgggatgagtaacatgaagctcagaattcatgggtgtattgaatactcccaaa |
18152090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 1786396 - 1786454
Alignment:
| Q |
19 |
gcatgtccagtaacccatgtgtggtatttgaaacgtcttcctagttatattgcgagcct |
77 |
Q |
| |
|
||||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
1786396 |
gcatgtctagtaacccatgtgtggcatttgtaacgtcttcctagttatattacgagcct |
1786454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 4 - 272
Target Start/End: Original strand, 28372029 - 28372297
Alignment:
| Q |
4 |
gggtagataatactagcatgtccagtaacccatgtgtggtatttgaaacgtcttcctagttatattgcgagccttttagataaacctcttaaagaattag |
103 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28372029 |
gggtatataaaactagcatgtccagtaacccatgtatggtatttgaaacgtcttcctagttatattgcgagccttttagataaacctcttaaagaattag |
28372128 |
T |
|
| Q |
104 |
aaggtctagtatactgcgatgtgtgatttgataaaaatttttattgtacagatttcaaatgagaaactgtcattccattcaattaaattggaatgtcctc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28372129 |
aaggtctagtatactgcgatgtgtgatttgataaaaattcttattgtacagatttcaaatgagaaactgtcattccattcaattaaattggaatgtcctc |
28372228 |
T |
|
| Q |
204 |
tatctggcatgtctcttgggatgagtaacatgaagctcagaattcatgggtgtattgaatacccccaaa |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28372229 |
tatctggcatgtctcttgggatgagtaacatgaagctcagaattcatgggtgtattgaatactcccaaa |
28372297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 4 - 272
Target Start/End: Original strand, 28379851 - 28380119
Alignment:
| Q |
4 |
gggtagataatactagcatgtccagtaacccatgtgtggtatttgaaacgtcttcctagttatattgcgagccttttagataaacctcttaaagaattag |
103 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28379851 |
gggtatataaaactagcatgtccagtaacccatgtatggtatttgaaacgtcttcctagttatattgcgagccttttagataaacctcttaaagaattag |
28379950 |
T |
|
| Q |
104 |
aaggtctagtatactgcgatgtgtgatttgataaaaatttttattgtacagatttcaaatgagaaactgtcattccattcaattaaattggaatgtcctc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28379951 |
aaggtctagtatactgcgatgtgtgatttgataaaaattcttattgtacagatttcaaatgagaaactgtcattccattcaattaaattggaatgtcctc |
28380050 |
T |
|
| Q |
204 |
tatctggcatgtctcttgggatgagtaacatgaagctcagaattcatgggtgtattgaatacccccaaa |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28380051 |
tatctggcatgtctcttgggatgagtaacatgaagctcagaattcatgggtgtattgaatactcccaaa |
28380119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 37704523 - 37704455
Alignment:
| Q |
264 |
acccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704523 |
acccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg |
37704455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 37698697 - 37698637
Alignment:
| Q |
272 |
aacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg |
332 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
37698697 |
aacaaaataagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttgg |
37698637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 37699044 - 37698974
Alignment:
| Q |
264 |
acccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
332 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| |||| |||||||| |
|
|
| T |
37699044 |
acccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 37437578 - 37437521
Alignment:
| Q |
275 |
aaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg |
332 |
Q |
| |
|
|||| ||||||||| |||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
37437578 |
aaaacaagggaatagctagactgaatttgtaaacaatctaataagtcagactttttgg |
37437521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 3578173 - 3578290
Alignment:
| Q |
16 |
ctagcatgtccagtaacccatgtgtggtatttgaaacgtcttcctagttatattgcgagccttttagataaacctcttaaagaattagaaggtctagtat |
115 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||| |||||||| |||| |||||| |||||| |
|
|
| T |
3578173 |
ctagcatgtctagtaatccatgtgtggtatttgaaacgtcttcctagttatattgtgagtcagatagataaagctcttaaaaaatttgaaggtatagtat |
3578272 |
T |
|
| Q |
116 |
actgcgatgtgtgatttgata |
136 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
3578273 |
actg---tgtgtgatttgata |
3578290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 223376 - 223452
Alignment:
| Q |
19 |
gcatgtccagtaacccatgtgtggtatttgaaacgtcttcctagttatattgcgagccttttagataaacctcttaa |
95 |
Q |
| |
|
|||||||| || || |||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
223376 |
gcatgtcccgtgactcatgtgtggtatttgaaaggtcttcctagttatatcgcgaatcttttagataaacctcttaa |
223452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University