View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17454_high_19 (Length: 312)
Name: NF17454_high_19
Description: NF17454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17454_high_19 |
 | |
|
| [»] scaffold0491 (2 HSPs) |
| |
|
| [»] chr8 (5 HSPs) |
| |
|
| [»] chr7 (13 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0491 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 1139 - 1430
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1139 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
1238 |
T |
|
| Q |
121 |
tatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
1239 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
1338 |
T |
|
| Q |
221 |
aacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1339 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
1430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 6026 - 6317
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
6026 |
acatcatcatacaagacagagaataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaaaccataaagcttcacga |
6125 |
T |
|
| Q |
121 |
tatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6126 |
tatgtttgtgctttatttctgttaaaattctcacttcatttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
6225 |
T |
|
| Q |
221 |
aacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
6226 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatacaatatctcatgtcaaagtcttctgtcgctt |
6317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 18739260 - 18739551
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18739260 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
18739359 |
T |
|
| Q |
121 |
tatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
18739360 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
18739459 |
T |
|
| Q |
221 |
aacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18739460 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
18739551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 18744224 - 18744515
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18744224 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
18744323 |
T |
|
| Q |
121 |
tatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
18744324 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactatcatcaaaagatggaacctctgcttcatagcggtgaagtttctttaaggc |
18744423 |
T |
|
| Q |
221 |
aacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18744424 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
18744515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 18749185 - 18749476
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18749185 |
acatcatcatacaagacagagaataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
18749284 |
T |
|
| Q |
121 |
tatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18749285 |
tatgtttgtgctttatttctgttaaaattctcacttcatttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
18749384 |
T |
|
| Q |
221 |
aacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
18749385 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatacaatatctcatgtcaaagtcttctgtcgctt |
18749476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 18723533 - 18723824
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18723533 |
acatcatcatacaagacagagaataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacta |
18723632 |
T |
|
| Q |
121 |
tatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18723633 |
tatgtttgtgctttatttctgttaaaattctcacttcatttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttaaggc |
18723732 |
T |
|
| Q |
221 |
aacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
18723733 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatacaatatctcatgtcaaagtcttctgtcgctt |
18723824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 18732996 - 18733045
Alignment:
| Q |
131 |
ctttatttctgataatattctcacttcgtttctgaaactctcatcaaaag |
180 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
18732996 |
ctttatttctgataatattctcacttcatttctaaaactctaatcaaaag |
18733045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 1596197 - 1595906
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1596197 |
acatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
1596098 |
T |
|
| Q |
121 |
tatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1596097 |
tatgtcggtgctttatttctgataatattctcacttcatttttgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
1595998 |
T |
|
| Q |
221 |
aacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1595997 |
aacaacctttccacttggtaattgtgccctgtaaacacttccatatgctcccgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
1595906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 1088791 - 1088500
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1088791 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
1088692 |
T |
|
| Q |
121 |
tatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1088691 |
tatgtttgtgctttatttctgataatattctcacttcatttttgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
1088592 |
T |
|
| Q |
221 |
aacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1088591 |
aacaaccttgccacttggtaattgtgccttgtaaacacttctatatgctcctgttccaatgcaatatctcatgtcaaagtcctctgttgctt |
1088500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 1541489 - 1541780
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1541489 |
acatcatcatacaagacagagaataagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcaaaatccataaagcttcacaa |
1541588 |
T |
|
| Q |
121 |
tatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1541589 |
tatgtcggtgctttatttctgataatattctcacttcatttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
1541688 |
T |
|
| Q |
221 |
aacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
312 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1541689 |
aacaacctttccacatggtaattgtgccttgtaaacacttccatatgctccggttccaatgcaatatctcatgtcgaagtcttctgttgctt |
1541780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 21 - 311
Target Start/End: Complemental strand, 1604527 - 1604237
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604527 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
1604428 |
T |
|
| Q |
121 |
tatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1604427 |
tatgtcggtgctttatttctgataatattttcacttcatttttgaaactctcatcaaaagatggaacctcttcttcatagccgtgaagtttctttaaggc |
1604328 |
T |
|
| Q |
221 |
aacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgct |
311 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
1604327 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcgaagtcttccgttgct |
1604237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 1106140 - 1105849
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1106140 |
acatcatcatacaagatagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
1106041 |
T |
|
| Q |
121 |
tatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1106040 |
tatgtcggtgctttatttctgataatattctcacttcatttttgaaactctcatcaaaagatggaacctcgacttcatagccgtgaagtttctttaaggc |
1105941 |
T |
|
| Q |
221 |
aacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1105940 |
aacaaccttgccacttggtaattgtgccttgtaaacacttccatatgctccagttccaatgcaatatctcatgtcaaagtcttccgttgctt |
1105849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 1557433 - 1557724
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1557433 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatatatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacga |
1557532 |
T |
|
| Q |
121 |
tatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
1557533 |
tatgtttgtgctttatttctgataatattctcacttcatttctgaaactctcatcaaaagatggaacctcagcttcatagccgtgaagtttctttaaagc |
1557632 |
T |
|
| Q |
221 |
aacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
312 |
Q |
| |
|
|||||| || |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1557633 |
aacaacattaccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
1557724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 1550723 - 1551014
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
1550723 |
acatcgtcatacaagacagtgaacaagcttcctctctccatgtactgatagatcaaaaacatgattctcttgtgcaagcagaatccatgaagcttcacaa |
1550822 |
T |
|
| Q |
121 |
tatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
1550823 |
tatgtcggtgctttatttctgtcaatattctcacttcatttctgaaactctcatcaaaagatggaacgtctgcttcatagccatgaagtttctttaaggc |
1550922 |
T |
|
| Q |
221 |
aacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
312 |
Q |
| |
|
|||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1550923 |
gacaaccttgccacatggtaattgtgccttgtaaacacttccatatgctccggttccaatgcaatatctcatgtcaaagtcttctgttgctt |
1551014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 24 - 312
Target Start/End: Complemental strand, 2329828 - 2329540
Alignment:
| Q |
24 |
tcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatat |
123 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||| |||| | |||||||||||||||||||| |||| |
|
|
| T |
2329828 |
tcatcatacaagacagagaacaagctacctttctccatgtactcgtagatcaaaaacatgattcttctgtggagacagaatccataaagcttcacgatat |
2329729 |
T |
|
| Q |
124 |
gtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggcaac |
223 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
2329728 |
gccggtgctttatatctgataatattctcacttcatttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttattgcaac |
2329629 |
T |
|
| Q |
224 |
aacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
312 |
Q |
| |
|
||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2329628 |
aacttttccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatacaatatctaatgtcaaagtcttctgttgctt |
2329540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 24 - 312
Target Start/End: Complemental strand, 2337727 - 2337439
Alignment:
| Q |
24 |
tcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatat |
123 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||| |||| | |||||||||||||||||||| |||| |
|
|
| T |
2337727 |
tcatcatacaagccagagaacaagctacctttctccatgtactcgtagatcaaaaacatgattcttctgtggagacagaatccataaagcttcacgatat |
2337628 |
T |
|
| Q |
124 |
gtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggcaac |
223 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
2337627 |
gtcggtgctttatatctgataatattttcacttcatttctgaaactctcatcaaaagatggaacctctgcttcatagccgtgaagtttctttattgcaac |
2337528 |
T |
|
| Q |
224 |
aacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
312 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2337527 |
aacttttccacatggtaattgtgccttataaacacttccatatgctcctgtcccaatgcaatatctaatgtcaaagtcttctgttgctt |
2337439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 22 - 311
Target Start/End: Complemental strand, 2321332 - 2321043
Alignment:
| Q |
22 |
catcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaat |
121 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2321332 |
catcatcatacaagacggagaacaaacttcctctctccatgtaatggtagatcaaaaacatgattcttttgtgcaagcaaaatccataaagcttcacaat |
2321233 |
T |
|
| Q |
122 |
atgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggca |
221 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||| | ||| ||||||||||||||||||||||| |||||| |
|
|
| T |
2321232 |
atttcggtgctttatttctgataatattctcacttcatttctaaaactttcatcaaaagctggcagctctgcttcatagccgtgaagtttcttcaaggca |
2321133 |
T |
|
| Q |
222 |
acaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgct |
311 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
2321132 |
acaacttttccacatggtaattgtgccttgtaaacacttccatatgctcctgttccaatgcaatatctaatgtcaaaatcttccgttgct |
2321043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 3955480 - 3955771
Alignment:
| Q |
20 |
gacatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcaca |
119 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||| ||||| || ||||||||||||||||| | |||||| ||||| || |||||||||||||||||| |
|
|
| T |
3955480 |
gacatcatcatgcaagacggagaacaagcttcctttttccatatactgatagatcaaaaacataactcttttatgcaaacaaaatccataaagcttcaca |
3955579 |
T |
|
| Q |
120 |
atatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaagg |
219 |
Q |
| |
|
|||| || |||||||||||||||||||||| ||||||| ||||| ||||| ||||||| |||||| ||||| ||||| |||| |||||||| |||| | |
|
|
| T |
3955580 |
atatttctgtgctttatttctgataatattttcacttcatttctaaaactttcatcaagagatggcacctctgcttcgtagctatgaagtttttttagtg |
3955679 |
T |
|
| Q |
220 |
caacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgct |
311 |
Q |
| |
|
|||||| || |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||||| |
|
|
| T |
3955680 |
caacaaatttaccacttggtaattgtgccttgtaaacacttccatatgctccttttccaatgcaatatttaatgtcaaagtcttttgttgct |
3955771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 21 - 300
Target Start/End: Original strand, 9532075 - 9532353
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||||| | |||||||||||||||||||||||||||||||| ||| || |||||||||||||| |||| |
|
|
| T |
9532075 |
acatcatcatacaaaaacgagaacaaacttcctttctc-acgtattgatagatcaaaaacatgattcttttgtacaatcataatccataaagcttaacaa |
9532173 |
T |
|
| Q |
121 |
tatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||| | ||| ||||||| | ||||||||||| |||| ||| |||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
9532174 |
tatttatgtgatttattttttataatattctcgcttcatttttgaaactcgcatcaaaagatggcacctctgcttcatagatgtgaagtttctttaaggc |
9532273 |
T |
|
| Q |
221 |
aacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
300 |
Q |
| |
|
||||| || ||| ||||||||| | ||| || |||||||||||||||||||| | ||||||||||| |||||||||| |
|
|
| T |
9532274 |
gacaactttgtcacatggtaattgagtcttgtatacacttccatatgctcctgtccatatgcaatatctaatgtcaaagt |
9532353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 30792447 - 30792155
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattctttt-gtgcaagcagaatccataaagcttcaca |
119 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||| |||||| | |||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| ||| |
|
|
| T |
30792447 |
acatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattctttttgtgcaagcagaatctataaagcttaaca |
30792348 |
T |
|
| Q |
120 |
atatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaagg |
219 |
Q |
| |
|
|||| | ||||||||||| |||||||||||||||||| ||| ||||||| | ||||||||| || | | ||||||| ||||||||||| ||||| |
|
|
| T |
30792347 |
atatttatgtgctttatttatgataatattctcacttcatttatgaaacttgtaacaaaagatgacacatttgtttcatagttgtgaagtttctataagg |
30792248 |
T |
|
| Q |
220 |
caacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
312 |
Q |
| |
|
||||||| || |||| || ||| || | ||| || |||||| ||| | ||| ||| | ||| ||||||| |||||||||| || |||||||| |
|
|
| T |
30792247 |
caacaactttgccacatgataaatgagtcttgtatacactttcatgtcctcatgtctcgatgtaatatctaatgtcaaagtgttatgttgctt |
30792155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 19250547 - 19250257
Alignment:
| Q |
21 |
acatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaa |
120 |
Q |
| |
|
|||||||||||||| || ||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19250547 |
acatcatcatacaaaaccgagaacaagcttcatttttc-atgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttaacaa |
19250449 |
T |
|
| Q |
121 |
tatgtcggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggc |
220 |
Q |
| |
|
||| | ||| ||||| | |||||||||||||||||| ||||||||||| |||||||||| || || || |||||||| ||||| ||||||||| || |
|
|
| T |
19250448 |
tatttatgtgttttatatatgataatattctcacttcaattctgaaactcgcatcaaaagacggcacatctacttcatagttgtgaaatttctttaaagc |
19250349 |
T |
|
| Q |
221 |
aacaacctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagtcttctgttgctt |
312 |
Q |
| |
|
||||| || |||| ||||||| | | ||| || |||||| |||||| |||||| ||||||||||| |||||||||| || |||||||| |
|
|
| T |
19250348 |
gacaactttaccacatggtaatcgagtcttgtatacactttcatatgatcctgtcatgatgcaatatctaatgtcaaagtgttgtgttgctt |
19250257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 27 - 300
Target Start/End: Original strand, 41668820 - 41669093
Alignment:
| Q |
27 |
tcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtc |
126 |
Q |
| |
|
|||||||| || |||||||| ||| |||| | ||||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||| | |
|
|
| T |
41668820 |
tcatacaaaactgagaacaaactttcttttttcatgtatcgatagattaaaaacattattcttttgtgcaagcaaaatccataaagcttaacaatattta |
41668919 |
T |
|
| Q |
127 |
ggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggcaacaac |
226 |
Q |
| |
|
|||||||||| | |||||||| ||||||| ||||||||||| |||||||||||| || || ||||||||| ||||||||||||||||| ||| |
|
|
| T |
41668920 |
tctgctttattttttataatattttcacttcaattctgaaactcacatcaaaagatgacacatctgcttcatagttgtgaagtttctttaaggtggcaaa |
41669019 |
T |
|
| Q |
227 |
ctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
300 |
Q |
| |
|
|| |||| || |||||| | ||| || ||||||||||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
41669020 |
tttgccacatgataattgagtcttgtatacacttccatatgcttatgtcacgatgcaatatctaatgtcaaagt |
41669093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 27 - 300
Target Start/End: Original strand, 42977746 - 42978019
Alignment:
| Q |
27 |
tcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtc |
126 |
Q |
| |
|
|||||||| || |||||||| ||| |||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| | |
|
|
| T |
42977746 |
tcatacaaaaccgagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttttgtgcaagcaaaatccataaagcttaacaatattta |
42977845 |
T |
|
| Q |
127 |
ggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggcaacaac |
226 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| || |||||||||||| || || ||||||||| ||||||||||||||||| ||| |
|
|
| T |
42977846 |
tctgctttatttttgataatattctcacttcaattctgaaattcgcatcaaaagatgacacatctgcttcatagttgtgaagtttctttaaggtggcaaa |
42977945 |
T |
|
| Q |
227 |
ctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
300 |
Q |
| |
|
|| |||| || |||||| | ||| || ||||||||||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
42977946 |
tttgccacatgataattgagtcttgtatacacttccatatgcttatgtcacgatgcaatatctaatgtcaaagt |
42978019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 300
Target Start/End: Complemental strand, 54123056 - 54122784
Alignment:
| Q |
28 |
catacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcg |
127 |
Q |
| |
|
||||||| || |||||||| ||| |||| | ||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| | |||| | |
|
|
| T |
54123056 |
catacaaaactgagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttttgtgcaagcaaaatatataaagcttaaagatatttat |
54122957 |
T |
|
| Q |
128 |
gtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggcaacaacc |
227 |
Q |
| |
|
|||||||||| | |||||||||||||||| || |||||||| |||||||||||| || || ||||||||| ||||||||||||||||| ||| |
|
|
| T |
54122956 |
ctgctttattttttataatattctcacttcaattgtgaaactcacatcaaaagatgacacatctgcttcatagttgtgaagtttctttaaggtggcaaat |
54122857 |
T |
|
| Q |
228 |
tttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
300 |
Q |
| |
|
|| |||| || |||||| | ||| || ||||||||||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
54122856 |
ttgccacatgataattgagtcttgtatacacttccatatgcttatgtcacgatgcaatatctaatgtcaaagt |
54122784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 300
Target Start/End: Original strand, 48712417 - 48712677
Alignment:
| Q |
39 |
gagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttattt |
138 |
Q |
| |
|
|||||||| ||| |||| | ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||| | || ||||||| |
|
|
| T |
48712417 |
gagaacaaactttcttttttcatgtattgatagattgaaaatatgattcttttgtgcaagcaaaatccataaagcttaacaatatttatctg-tttattt |
48712515 |
T |
|
| Q |
139 |
ctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggcaacaacctttccacttgg |
238 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||||||||| | || || |||| |||| ||||||||||||||||| ||| || |||| || |
|
|
| T |
48712516 |
ttgataatattctcacttcaattctgaaaatcgcatcaaaagaagacacatctgcttaatagttgtgaagtttctttaaggtggcaaatttgccacatga |
48712615 |
T |
|
| Q |
239 |
taattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
300 |
Q |
| |
|
|||||| | ||| || ||||||||||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
48712616 |
taattgagtcttgtatacacttccatatgcttatgtcacgatgcaatatctaatgtcaaagt |
48712677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 300
Target Start/End: Complemental strand, 16880331 - 16880158
Alignment:
| Q |
128 |
gtgctttatttctgataatattctcac-ttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggcaacaac |
226 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||| || | |||||||| ||||| |||||||||||| |||| |
|
|
| T |
16880331 |
gtgctttatttctgataatattctcacattcatttctgaaactcgcatcaaaagatgacacttttacttcatagttgtgaaatttctttaaggcggcaac |
16880232 |
T |
|
| Q |
227 |
ctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
300 |
Q |
| |
|
|| | | ||||||| | | ||| || |||||||||||||||| ||| || ||||||||||| |||||||||| |
|
|
| T |
16880231 |
tttgcaagatggtaatcgagtcttgtatacacttccatatgctcttgtgccgatgcaatatctaatgtcaaagt |
16880158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 39 - 300
Target Start/End: Complemental strand, 31658144 - 31657883
Alignment:
| Q |
39 |
gagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttattt |
138 |
Q |
| |
|
|||||||| ||| |||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| | |||||||||| |
|
|
| T |
31658144 |
gagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttattt |
31658045 |
T |
|
| Q |
139 |
ctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggcaacaacctttccacttgg |
238 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||||||||||| || || ||| ||| ||||||||||||||||| |||| || |||| || |
|
|
| T |
31658044 |
ttgataatattctcacttcaattctgaaattcgcatcaaaagatgacacatctatttcgtagttgtgaagtttctttaaggtgacaaatttgccacatga |
31657945 |
T |
|
| Q |
239 |
taattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
300 |
Q |
| |
|
|||||| | ||| || |||||||||| |||| ||| | ||||||||||| |||||||||| |
|
|
| T |
31657944 |
taattgagtcttgtatacacttccatgtgcttatgtcacgatgcaatatctaatgtcaaagt |
31657883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 36620744 - 36620555
Alignment:
| Q |
27 |
tcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtc |
126 |
Q |
| |
|
|||||||| || |||||||| ||| || | | ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| | |
|
|
| T |
36620744 |
tcatacaaaaccgagaacaaactttctcttttcatgtattgatagattaaaaacatgattcttttgtgcaagcaaaatccataaagcttaacaatattta |
36620645 |
T |
|
| Q |
127 |
ggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaagg |
219 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||| ||||||||||| || || |||| |||| ||||||||||||||||| |
|
|
| T |
36620644 |
tctgctttatttttgataatattctcacttcaattctgaaactcgcatcaaaagat---acatctgcttaatagttgtgaagtttctttaagg |
36620555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 39 - 300
Target Start/End: Original strand, 8873078 - 8873340
Alignment:
| Q |
39 |
gagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagc-agaatccataaagcttcacaatatgtcggtgctttatt |
137 |
Q |
| |
|
|||||||| ||| |||| | ||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| | ||||| | ||||||||| |
|
|
| T |
8873078 |
gagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttttgtgcaagcaaaaatccataaagcttaataatatttatctgctttatt |
8873177 |
T |
|
| Q |
138 |
tctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggcaacaacctttccacttg |
237 |
Q |
| |
|
| | |||||||||||||||| |||||||||| ||||||| |||| || || ||||||||| ||||||||||||||||| ||| || |||| || |
|
|
| T |
8873178 |
ttttataatattctcacttcaattctgaaactggcatcaaacgatgacacatctgcttcatagttgtgaagtttctttaaggtcgcaaatttgccacatg |
8873277 |
T |
|
| Q |
238 |
gtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
300 |
Q |
| |
|
|||||| | ||| || ||||||||||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
8873278 |
ataattgagtcttgtatacacttccatatgcttatgtcacgatgcaatatctaatgtcaaagt |
8873340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 39102260 - 39102416
Alignment:
| Q |
27 |
tcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtc |
126 |
Q |
| |
|
|||||||| || |||||||| ||| || | | |||||||||||| || ||||||||| |||||||||||||||| |||||||||||||| ||||||| | |
|
|
| T |
39102260 |
tcatacaaaaccgagaacaaactttctcttttcatgtattgatatattaaaaacatgcttcttttgtgcaagcaaaatccataaagcttaacaatattta |
39102359 |
T |
|
| Q |
127 |
ggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatg |
183 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
39102360 |
tctgctttatttttgataatattctcacttcaattctaaaactcgcatcaaaagatg |
39102416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 27 - 300
Target Start/End: Complemental strand, 1257950 - 1257677
Alignment:
| Q |
27 |
tcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtc |
126 |
Q |
| |
|
|||||||| || |||||||| ||| |||| | ||||||||||||||| ||||||||||||||||||||||| || ||| ||||||| || ||||||| | |
|
|
| T |
1257950 |
tcatacaaaaccgagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttttgtgcaaacaaaattcataaagtttaacaatattta |
1257851 |
T |
|
| Q |
127 |
ggtgctttatttctgataatattctcacttcgtttctgaaactctcatcaaaagatggaacctcggcttcatagccgtgaagtttctttaaggcaacaac |
226 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||| |||||||| ||| || || |||||||| ||||||||||||||||| ||| |
|
|
| T |
1257850 |
tctgctttatttttgataatattctcacttcaattctgaaactcgcatcaaaaaatgacacatctgcttcatatttgtgaagtttctttaaggtggcaaa |
1257751 |
T |
|
| Q |
227 |
ctttccacttggtaattgtgccttataaacacttccatatgctcctgttccaatgcaatatctcatgtcaaagt |
300 |
Q |
| |
|
| |||| || |||||| | ||| || |||||| |||||||| ||| | ||||||||||| |||||||||| |
|
|
| T |
1257750 |
ttggccacatgataattgagtcttgtatacactttcatatgcttatgtcacgatgcaatatctaatgtcaaagt |
1257677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University