View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17454_high_1_N (Length: 403)

Name: NF17454_high_1_N
Description: NF17454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17454_high_1_N
NF17454_high_1_N
[»] chr4 (2 HSPs)
chr4 (23-382)||(16988055-16988414)
chr4 (124-219)||(35088802-35088897)
[»] chr2 (3 HSPs)
chr2 (23-382)||(21807540-21807899)
chr2 (71-368)||(20971202-20971497)
chr2 (128-218)||(23682248-23682338)
[»] chr5 (4 HSPs)
chr5 (71-366)||(26465292-26465587)
chr5 (130-326)||(23884074-23884270)
chr5 (62-213)||(23958779-23958930)
chr5 (287-323)||(23958669-23958705)
[»] chr6 (5 HSPs)
chr6 (31-367)||(34068262-34068598)
chr6 (109-234)||(20850027-20850152)
chr6 (112-236)||(14617738-14617862)
chr6 (164-242)||(28561533-28561611)
chr6 (62-303)||(12302377-12302618)
[»] chr7 (5 HSPs)
chr7 (128-228)||(3004921-3005021)
chr7 (137-246)||(8853841-8853950)
chr7 (170-219)||(18477565-18477614)
chr7 (172-236)||(19666209-19666273)
chr7 (134-228)||(19813298-19813392)
[»] chr1 (2 HSPs)
chr1 (128-228)||(37737401-37737501)
chr1 (122-225)||(13427891-13427994)
[»] scaffold0257 (1 HSPs)
scaffold0257 (83-236)||(8273-8426)
[»] chr8 (2 HSPs)
chr8 (134-306)||(18551164-18551336)
chr8 (125-183)||(2998101-2998159)
[»] chr3 (3 HSPs)
chr3 (170-279)||(44667108-44667217)
chr3 (77-300)||(18963220-18963443)
chr3 (23-75)||(4643364-4643416)


Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 23 - 382
Target Start/End: Complemental strand, 16988414 - 16988055
Alignment:
Q  23 acatcatcataaggagaactagaatcagtgtgtaattttcatgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaa 122  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16988414 acatcatcataaggagaactagaatcagtgtgtaatttgcatgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcctgtatcagttaaaa 16988315  T
Q  123 gatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatctt 222  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988314 gatcaagacaatactttctttgacaaagagagattccttgtgaggaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatctt 16988215  T
Q  223 aaaagaagaatgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaa 322  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16988214 aaaagaagaatgcataatggctttaatatcttgaaattcagagatagaatttccagctaggatcacatcatcaacatacacaagtaaaactgtgaatgaa 16988115  T
Q  323 gaagcagtcttcttgatgaagagagagtgatcagaagcagattgaacataatgatgatgt 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988114 gaagcagtcttcttgatgaagagagagtgatcagaagcagattgaacataatgatgatgt 16988055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 35088897 - 35088802
Alignment:
Q  124 atcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgat 219  Q
    |||||| ||||||||||||||||| ||||| || |||  |   |||||||||||||| | |||||| |||||||| |  || ||||||||||||||    
T  35088897 atcaaggcaatactttctttgacagagagaaatgcctgctttggaatgagcaacctcaataccaaggaagtatttgagttgaccaagatccttgat 35088802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 23 - 382
Target Start/End: Original strand, 21807540 - 21807899
Alignment:
Q  23 acatcatcataaggagaactagaatcagtgtgtaattttcatgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaa 122  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||    
T  21807540 acatcatcataaggagaactagaatcagtgtgtaatttgcaggaagggtcagatggcgtagaaataggtttggaagctaaaaatcatgtattagttaaaa 21807639  T
Q  123 gatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatctt 222  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21807640 gatcaagacaatactttctttgacaaagagagattccttgtgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatctt 21807739  T
Q  223 aaaagaagaatgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaa 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  21807740 aaaagaagaatgcagaatggctttaatatcttggaattcagagatagaatttccagctaggatcacatcatcaacatacacaagtaaaattgtgaatgaa 21807839  T
Q  323 gaagcagtcttcttgatgaagagagagtgatcagaagcagattgaacataatgatgatgt 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21807840 gaagcagtcttcttgatgaagagagagtgatcagaagcagattgaacataatgatgatgt 21807899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 71 - 368
Target Start/End: Original strand, 20971202 - 20971497
Alignment:
Q  71 tcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaat 170  Q
    ||||||||||||||| ||||||| ||||| | ||| | |||||||||  |  | |||||||| || |||||||| ||||||||||| |  | ||| ||||    
T  20971202 tcagatggtgtagaatcaggttttgaagcaagaaaacatgtatcagtcta--ggtcaagacattattttctttggcaaagagagatgcactgtgatgaat 20971299  T
Q  171 gagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagataga 270  Q
     ||||||||||| ||||||||| ||||| || || |||||| |||| ||||| || |||||||||||| ||  ||| || || || || ||||| |  ||    
T  20971300 aagcaacctctagaccaagaaaatatttcaattgaccaagagccttaatcttgaaggaagaatgcagattgattttgatgtcctgaaactcagaaagtga 20971399  T
Q  271 atttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtcttcttgatgaagagagagtgatcagaagcagattgaa 368  Q
    | | ||  | |  ||||||||||||||||| ||||| ||  |||||||||||| | | |||||||| |||||||||||||||||||| ||||||||||    
T  20971400 agtaccaacaataatcacatcatcaacataaacaagcaaggctgtgaatgaagtatctgtcttcttaatgaagagagagtgatcagatgcagattgaa 20971497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 23682338 - 23682248
Alignment:
Q  128 agacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttga 218  Q
    |||||||||||||||||||| |  || || |||| |  |||||||||||||||||||||||| || |||||||| ||||||||||| ||||    
T  23682338 agacaatactttctttgacacaatgaaataccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttga 23682248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 71 - 366
Target Start/End: Original strand, 26465292 - 26465587
Alignment:
Q  71 tcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaat 170  Q
    ||||||||||||||| ||||||| | ||| | ||||| | |||||||||  |||||||||||||| |||||||| ||||||||||| |||| ||| ||||    
T  26465292 tcagatggtgtagaagcaggttttgcagcaagaaatcctatatcagttaggagatcaagacaatattttctttggcaaagagagatgccttgtgaggaat 26465391  T
Q  171 gagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagataga 270  Q
    ||||||| |||||||||||||||||||| || |||||||||||||| || |  |||| |||||||||||||||||| || ||||||||||||||||  ||    
T  26465392 gagcaacttctaaaccaagaaagtatttcaattggccaagatccttaatttctaaagcagaatgcagaatggctttgatgtcttggaattcagagagtga 26465491  T
Q  271 atttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagtcttcttgatgaagagagagtgatcagaagcagattg 366  Q
    | | || |  | |||||||||||||||||| ||||| ||| |||||||||||| |   |||||||| ||||| ||||| |||||||| | ||||||    
T  26465492 agtaccagtgatgatcacatcatcaacataaacaagcaaagctgtgaatgaagtatatgtcttcttaatgaaaagagaatgatcagatgtagattg 26465587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 130 - 326
Target Start/End: Original strand, 23884074 - 23884270
Alignment:
Q  130 acaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaa 229  Q
    ||||||||||||||| || || |||||||||| |  ||||||||| |||||||||||||| || |||||||| ||||||||||| ||||| || ||||||    
T  23884074 acaatactttctttggcatagtgagattccttgtttagaatgagctacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaagaa 23884173  T
Q  230 gaatgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaag 326  Q
       || |||||| |||| || |  || |||||| | |  || |||||||| || || | |||||| ||||||||||| |  | ||||||||||||||    
T  23884174 ttgtgaagaatgtctttgatgttctgaaattcataaagtgagtttcctgcaagaatgatatcatccacatacacaagaagtattgtgaatgaagaag 23884270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 62 - 213
Target Start/End: Complemental strand, 23958930 - 23958779
Alignment:
Q  62 catgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgaca-aagagagattcct 160  Q
    ||||| || ||| |||||||||||| ||||||||| || |  || | ||| ||||| | ||||||||| ||||| ||||||||||| |||| | || |||    
T  23958930 catgatggatcaaatggtgtagaaagaggtttggatgcaaggaaacatgtgtcagtcagaagatcaaggcaatattttctttgacataagaaa-atccct 23958832  T
Q  161 tttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatc 213  Q
    | |||||| |||||||||||||||||||| |||||||| || |||||||||||    
T  23958831 tgtgaagagtgagcaacctctaaaccaaggaagtatttcaattggccaagatc 23958779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 23958705 - 23958669
Alignment:
Q  287 acatcatcaacatacacaagtaaaactgtgaatgaag 323  Q
    |||||||||||||| || |||||||||||||||||||    
T  23958705 acatcatcaacataaaccagtaaaactgtgaatgaag 23958669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 31 - 367
Target Start/End: Complemental strand, 34068598 - 34068262
Alignment:
Q  31 ataaggagaactagaatcagtgtgtaattttcatgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaaga 130  Q
    |||||| | |||||||||| | ||||| || || |||||||||||||| || |||||||||||| |||| | ||  |  ||||||||||  | ||||||     
T  34068598 ataaggggcactagaatcattatgtaacttgcaagaagggtcagatggagtggaaacaggtttgcaagccagaagaccagtatcagttagcaaatcaagg 34068499  T
Q  131 caatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaag 230  Q
    ||||| ||||| ||||| ||||| || ||||  |||||||||||||||||||| ||||| |||||||| || || ||||| |||||||| |||||||| |    
T  34068498 caatattttctctgacatagagaaatgccttcagaagaatgagcaacctctaagccaaggaagtatttcaattgaccaaggtccttgattttaaaagagg 34068399  T
Q  231 aatgcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaagtaaaactgtgaatgaagaagcagt 330  Q
    |||||| ||||| ||| ||    || | |||||| | ||| |  || || |  ||||||||||| ||||| || ||||| || || ||||||| ||  ||    
T  34068398 aatgcaaaatggatttgatggagtgaagttcagaaagagagtcaccagcaataatcacatcatccacatagactagtaacacagtaaatgaagtagtggt 34068299  T
Q  331 cttcttgatgaagagagagtgatcagaagcagattga 367  Q
    ||||||| |||| | ||| |||||||||| |||||||    
T  34068298 cttcttggtgaacaaagaatgatcagaagtagattga 34068262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 20850027 - 20850152
Alignment:
Q  109 tgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggcca 208  Q
    ||||||||| | ||||||||||||||||||||| || || | | | ||||||| |||||| ||||||| || ||||||||||||||| || ||||| |||    
T  20850027 tgtatcagtgagaagatcaagacaatactttctctggcacaaaaatattccttgtgaagagtgagcaaactttaaaccaagaaagtacttcaactgacca 20850126  T
Q  209 agatccttgatcttaaaagaagaatg 234  Q
    ||||| || || || || ||||||||    
T  20850127 agatctttaattttgaatgaagaatg 20850152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 14617862 - 14617738
Alignment:
Q  112 atcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaaga 211  Q
    |||||| | |||||| |||||||||||||| | | |||| || || ||||  ||||| |||||||||||||||||||| || ||||| || ||||| |      
T  14617862 atcagtgagaagatccagacaatactttctctaaaaaagtgaaatgccttgagaagagtgagcaacctctaaaccaaggaattatttcaattggcccaag 14617763  T
Q  212 tccttgatcttaaaagaagaatgca 236  Q
    ||||| ||||| ||||| |||||||    
T  14617762 tccttaatcttgaaagaggaatgca 14617738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 28561611 - 28561533
Alignment:
Q  164 gaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatgg 242  Q
    |||||||| || |||||||| |||||||| ||||| ||||| |||||||| || ||||| || ||||||||||| ||||    
T  28561611 gaagaatgtgccacctctaatccaagaaaatatttcaactgaccaagatctttaatcttgaaggaagaatgcaggatgg 28561533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 303
Target Start/End: Complemental strand, 12302618 - 12302377
Alignment:
Q  62 catgaagggtcagatggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattcctt 161  Q
    |||||||| ||||| || |||||||||||||||||||  | |   | |  |||||| | ||||||||  |||||||| |||||| | |  ||||||||||    
T  12302618 catgaaggttcagaaggagtagaaacaggtttggaagtcagatgacctagatcagtgagaagatcaatgcaatacttcctttgatacaaggagattcctt 12302519  T
Q  162 ttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattc 261  Q
    | || ||||| | ||| || |||  | | ||||| |||||||  |||||||| || ||||| || |||||||| || |||||||| |||| ||| |||||    
T  12302518 tagatgaatgtgaaacttcaaaatgatggaagtaatttaactaaccaagatctttaatcttgaaggaagaatgtaggatggctttcatatgttgaaattc 12302419  T
Q  262 agagatagaatttcctgctaggatcacatcatcaacatacac 303  Q
    ||| || ||||  || || | ||||| ||||| |||||||||    
T  12302418 agacatggaatcaccagcaatgatcatatcattaacatacac 12302377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 3005021 - 3004921
Alignment:
Q  128 agacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaag 227  Q
    |||||||||||||||||||| |  |||||||||| |  |||||||||||||||||||||||| || |||||||| ||||||||||| ||||| || ||||    
T  3005021 agacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaag 3004922  T
Q  228 a 228  Q
    |    
T  3004921 a 3004921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 246
Target Start/End: Complemental strand, 8853950 - 8853841
Alignment:
Q  137 tttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgca 236  Q
    ||||| ||||||||||| |||||||  ||||||||||||| |||||| ||||| || || || || || |||||||||||||| ||||| || || ||||    
T  8853950 tttctctgacaaagagatattccttgagaagaatgagcaatctctaatccaaggaaatacttcaattgaccaagatccttgattttaaaggaggagtgca 8853851  T
Q  237 gaatggcttt 246  Q
    ||||||||||    
T  8853850 gaatggcttt 8853841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 18477614 - 18477565
Alignment:
Q  170 tgagcaacctctaaaccaagaaagtattttaactggccaagatccttgat 219  Q
    |||||||| ||||||||||||||  |||| ||||||||||||||||||||    
T  18477614 tgagcaacttctaaaccaagaaaaaatttcaactggccaagatccttgat 18477565  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 19666273 - 19666209
Alignment:
Q  172 agcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgca 236  Q
    ||||||||||||||||||||| ||||| |||||||| |  ||||| ||||| ||||| |||||||    
T  19666273 agcaacctctaaaccaagaaaatatttcaactggcccaagtccttaatcttgaaagaggaatgca 19666209  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 19813298 - 19813392
Alignment:
Q  134 tactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaaga 228  Q
    ||||||||||| || || || || |||| |  |||||||||||| ||||||||||| ||||||||||| |||| | |||| ||||| || |||||    
T  19813298 tactttctttggcatagggaaatcccttgttcagaatgagcaacttctaaaccaaggaagtattttaattggcaatgatctttgattttgaaaga 19813392  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 37737401 - 37737501
Alignment:
Q  128 agacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaag 227  Q
    |||||||||||||||||||| |  |||||||||| |  |||||||||||||||||||||||| || |||||||| ||||||||||| ||||| || ||||    
T  37737401 agacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttgattttgaaag 37737500  T
Q  228 a 228  Q
    |    
T  37737501 a 37737501  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 13427891 - 13427994
Alignment:
Q  122 agatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatct 221  Q
    |||||||||||||| |||||||| || | |  |||||| ||   ||||| ||| |||||||  |||||||| ||||||| ||||||||||||||||||||    
T  13427891 agatcaagacaatattttctttggcatatactgattccattcttagaataagccacctctatgccaagaaaatattttagctggccaagatccttgatct 13427990  T
Q  222 taaa 225  Q
    ||||    
T  13427991 taaa 13427994  T

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Target: scaffold0257 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 236
Target Start/End: Complemental strand, 8426 - 8273
Alignment:
Q  83 gaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctcta 182  Q
    ||||| |||||||||||||||   | || |||||| |  ||||| |||||||| ||| | ||||||| ||| || ||||  ||||| |||||||||||||    
T  8426 gaaactggtttggaagctaaatgacctgaatcagtgaggagatccagacaatattttttctgacaaacagatatgccttgagaagagtgagcaacctcta 8327  T
Q  183 aaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgca 236  Q
    |||||||||| ||||| || ||||| |  ||||| ||||| ||||| |||||||    
T  8326 aaccaagaaaatatttcaattggcccaagtccttaatcttgaaagaggaatgca 8273  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 306
Target Start/End: Original strand, 18551164 - 18551336
Alignment:
Q  134 tactttctttgacaaagagagattccttttgaagaatgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaat 233  Q
    ||||||||||| || | ||| || |||| |  ||||||||| || ||||||||||| || ||||| |||||||||||||| ||||| || |||||   ||    
T  18551164 tactttctttggcataaagatatcccttgttcagaatgagctacttctaaaccaaggaaatatttcaactggccaagatctttgattttgaaagagttat 18551263  T
Q  234 gcagaatggctttaatatcttggaattcagagatagaatttcctgctaggatcacatcatcaacatacacaag 306  Q
    | ||||||| ||| || | ||  |||||||| |  ||||||||||||||||| | |||||| ||||| |||||    
T  18551264 gaagaatggttttgatgttttcaaattcagaaagtgaatttcctgctaggatgatatcatctacatagacaag 18551336  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 2998159 - 2998101
Alignment:
Q  125 tcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaacctctaa 183  Q
    ||||||||||||||||||||| ||| |||||| |||| |   |||||||||||||||||    
T  2998159 tcaagacaatactttctttgagaaatagagatcccttctttggaatgagcaacctctaa 2998101  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 44667108 - 44667217
Alignment:
Q  170 tgagcaacctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagatag 269  Q
    ||||||||||| | ||||||||| || || ||||| || | ||| |||||||| || |||| ||||||||||| ||| |||| |||||| ||||| | ||    
T  44667108 tgagcaacctcaagaccaagaaaatagttcaactgtcccaaatctttgatcttgaatgaagcatgcagaatggatttgatatgttggaactcagaaagag 44667207  T
Q  270 aatttcctgc 279  Q
    ||||||||||    
T  44667208 aatttcctgc 44667217  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 300
Target Start/End: Original strand, 18963220 - 18963443
Alignment:
Q  77 ggtgtagaaacaggtttggaagctaaaaatcttgtatcagttaaaagatcaagacaatactttctttgacaaagagagattccttttgaagaatgagcaa 176  Q
    ||||||||||||||||||||||||| |   | |  |||| | | ||||||||  ||||| || ||||| || | |||||||||||  || ||||| ||||    
T  18963220 ggtgtagaaacaggtttggaagctagatgacctaaatcaataagaagatcaatgcaatatttcctttggcacaaagagattccttgagatgaatgtgcaa 18963319  T
Q  177 cctctaaaccaagaaagtattttaactggccaagatccttgatcttaaaagaagaatgcagaatggctttaatatcttggaattcagagatagaatttcc 276  Q
    | ||||||||||| || ||||| ||||| |||||||| || || || || || |||||||| ||  | || |||| ||| |||||||| ||||  || ||    
T  18963320 cttctaaaccaaggaaatatttcaactgaccaagatctttaattttgaatgacgaatgcaggatatcattgatatgttgaaattcagacatagtgttacc 18963419  T
Q  277 tgctaggatcacatcatcaacata 300  Q
     || |  |||||||||||||||||    
T  18963420 agcaattatcacatcatcaacata 18963443  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 4643364 - 4643416
Alignment:
Q  23 acatcatcataaggagaactagaatcagtgtgtaattttcatgaagggtcaga 75  Q
    |||||||||||||||| |||||||||| |||||| ||| ||||| || |||||    
T  4643364 acatcatcataaggagcactagaatcattgtgtagtttgcatgatggatcaga 4643416  T

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