View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17454_high_2 (Length: 402)
Name: NF17454_high_2
Description: NF17454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17454_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 25 - 394
Target Start/End: Complemental strand, 8188467 - 8188098
Alignment:
| Q |
25 |
catcactgtccagcaactcctgaagctctaactcaaagtctgcatcattatcctcatcatcatcaaggttttcattttcatgagatgaaagaccgtcacg |
124 |
Q |
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| T |
8188467 |
catcactgtccagcaactcctgaagctctaactcaaagtctgcatcattatcctcatcatcatcaaggttttcattttcatgagatgaaagaccgtcacg |
8188368 |
T |
|
| Q |
125 |
ttctccaccctgtaatacagctgctagaaattttttatactcttcttcatcatcgacattttgaacatcatcttcatcatcggtctcttgaagaaaggtc |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8188367 |
ttctccaccctgtaatacagctgctagaaattttttatactcttcttcatcatcgacattttgaacatcatcttcatcatcagtctcttgaagaaaggtc |
8188268 |
T |
|
| Q |
225 |
tcaagctcatcaagactgaaaccttcaagcgaataacgagctctagtacgcatacaaatagcatcctcagtatctatgtctatcactgggcttcggggtt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8188267 |
tcaagctcatcaagactgaaaccttcaagcgaataacgagctctagtacgcatacaaatagcatcctcagtatctatgtctatcactgggcttcggggtt |
8188168 |
T |
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| Q |
325 |
tcgttgtgttgcttatgtcttctatcctaaaaccatcactagtaccactaatcaagtcattcttcatctc |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8188167 |
tcgttgtgttgcttatgtcttctatcctaaaaccatcactagtaccactaatcaagtcattcttcttctc |
8188098 |
T |
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