View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17454_low_1 (Length: 461)
Name: NF17454_low_1
Description: NF17454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17454_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 54472125 - 54472556
Alignment:
| Q |
1 |
aacaatacaaatgataacaatgggaatcaattgagcgtgggtggtataatagcagttgcaggtgcagcttgtataatcctccttgtcattatcctactct |
100 |
Q |
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| T |
54472125 |
aacaatacaaatgataacaatgggaatcaattgagcgtgggtggtataatagcagttgcaggtgcagcttgtataatcctccttgtcattatcctactct |
54472224 |
T |
|
| Q |
101 |
gcgttatatgtacaagaaggaagaagagatcacaacctcatcacattcattactaccctactccagcacacggtatatatttttatatatctcctatttc |
200 |
Q |
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| T |
54472225 |
gcgttatatgtacaagaaggaagaagagatcacaacctcatcacattcattactaccctactccagcacacggtatatatttttatatatctcctatttc |
54472324 |
T |
|
| Q |
201 |
nnnnnnnaataggaatttgcaaataagcatgttatgaagtttagaatagttaatggaggaag------------ttaattaattaatgattcatagccta |
288 |
Q |
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| T |
54472325 |
tttttttaataggaatttgcaaataagcatgttatgaagtttagaatagttaatgggggaagctaattaattaattaattaattaatgattcatagccta |
54472424 |
T |
|
| Q |
289 |
ttcttannnnnnngatcagaaatggatcctctaaagcttttgcatggtgccatagtcgacgcggtagaggatccaaatttgaatcttatgtagctacaat |
388 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472425 |
ttcttatttttttgatcagaaatggatcctctaaagcttttgcatggtgccatagtcgacgcggtagaggatccaaatttgaatcttatgtagctacaat |
54472524 |
T |
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| Q |
389 |
atggtgttgcaaatgtagaaaccgttagatat |
420 |
Q |
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| T |
54472525 |
atggtgttgcaaatgtagaaactgtaagatat |
54472556 |
T |
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