View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17454_low_2 (Length: 258)
Name: NF17454_low_2
Description: NF17454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17454_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 33 - 174
Target Start/End: Complemental strand, 37168881 - 37168740
Alignment:
| Q |
33 |
atgatatgcacatatgcacattttttgttattctagtttctaatctatcaattataagatctaagatttcaatctcctcgaattccaaattcaattaaat |
132 |
Q |
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| T |
37168881 |
atgatatgcacatatgcacattttttgttattctagtttctaatctatcaattataagatctaagatttcaatctcctcgaattccaatttcaattaaat |
37168782 |
T |
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| Q |
133 |
gtgtgaaatatctccacatgctatagagtcgtgcattggatg |
174 |
Q |
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| T |
37168781 |
gtctgaaatatctccacatgctatagagtcgtgcattggatg |
37168740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 37168707 - 37168624
Alignment:
| Q |
174 |
ggtaatttgtaccgcacaaatcagnnnnnnnggggttgtgttatatctaacttaaactctaaaatgatataagacaattaaaatc |
258 |
Q |
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| T |
37168707 |
ggtaatttgtaccgcacaaatcagttttgt-gaggttgtgttatgtctaacttaaactctaaaatgatataagacaattaaaatc |
37168624 |
T |
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