View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17455_high_10 (Length: 348)
Name: NF17455_high_10
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17455_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 24616445 - 24616109
Alignment:
| Q |
1 |
gaagtgaatgtcagaataaataaacaaagagattgctaatttaattatgnnnnnnnn-tgataacctgcta--------gtaggcgatggaacggaaaag |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24616445 |
gaagtgaatgtcagaataaataaacaaagagattgctaatttaattatgaaaaaaaaatgataacctgctatcgtagttgtaggcgatggaacggaaaag |
24616346 |
T |
|
| Q |
92 |
ccactaaagtggatcctccaacaacaagctactaccatcaaagttgcaatgttgtgaatcctctttgtaatgacagtttgaagaacagcttgcacttatt |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24616345 |
ccactaaagtggatcctccaacaacaagctactgccatcaaagttgcaatgttgtgaatcctctttgtaatgacagtttggagaacagcttgcacttatt |
24616246 |
T |
|
| Q |
192 |
tttggataccatggcagaggagcggatttttagcctgatttgcagtagactgcagcagtggctgatactgcttctgctgctgtgatttttaaccgcctac |
291 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24616245 |
tttggataccatggcagaggggcggatttttagcctgatttgctgtagactgcagcagtggctgatactgcttctgctgctgtgatttttaaccgcctac |
24616146 |
T |
|
| Q |
292 |
agaatctggacaaagcaagatggcaaactaaccaatg |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24616145 |
agaatctggacaaagcaagatggcaaactaaccaatg |
24616109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 96 - 304
Target Start/End: Original strand, 24107761 - 24107969
Alignment:
| Q |
96 |
taaagtggatcctc-caacaacaagctactaccatcaaagttgcaatgttgtgaatcctctttgtaatgacagtttgaagaacagcttgcacttattttt |
194 |
Q |
| |
|
||||||||| |||| ||| ||||||||||| | ||| ||||||||||| |||| |||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
24107761 |
taaagtggaccctctcaagaacaagctactgctatcgaagttgcaatgctgtgcatcctctttgtaatgacagttt--aggacagcttgcacttattttt |
24107858 |
T |
|
| Q |
195 |
-ggataccatggcagaggagcggatttttagcctgatttgcagtagactgcagcagtggctgatactgcttctgctgctgtgatttttaaccgcctacag |
293 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24107859 |
tggatgacatggcagagggtcggatttttggcctgatttgcagtagactacagcagtgcctgatactgcttctgatgctgtgatttttaaccgcctacag |
24107958 |
T |
|
| Q |
294 |
aatctggacaa |
304 |
Q |
| |
|
||||||||||| |
|
|
| T |
24107959 |
aatctggacaa |
24107969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 149 - 291
Target Start/End: Original strand, 24114471 - 24114613
Alignment:
| Q |
149 |
atcctctttgtaatgacagtttgaagaacagcttgcacttatttttggataccatggcagaggagcggatttttagcctgatttgcagtagactgcagca |
248 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||| | |||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24114471 |
atcctctttgtaatgacagtttggaggacatcttgcgcatattttctgataccatggcagaggggcggatttttggcctgatttgcagtagactgcagca |
24114570 |
T |
|
| Q |
249 |
gtggctgatactgcttctgctgctgtgatttttaaccgcctac |
291 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24114571 |
gtggctgatactgcttctgcttctgtgatttttaaccgcctac |
24114613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 24114366 - 24114407
Alignment:
| Q |
7 |
aatgtcagaataaataaacaaagagattgctaatttaattat |
48 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24114366 |
aatgtaagaataaataaacaaagagattgttaatttaattat |
24114407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24107658 - 24107706
Alignment:
| Q |
1 |
gaagtgaatgtcagaataaataaacaaagagattgctaatttaattatg |
49 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||| |||||||| |||| |
|
|
| T |
24107658 |
gaagtaaatgtcagaacaaataaacaaagagattgttaatttaagtatg |
24107706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University