View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17455_high_12 (Length: 338)

Name: NF17455_high_12
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17455_high_12
NF17455_high_12
[»] chr5 (10 HSPs)
chr5 (1-222)||(38043323-38043545)
chr5 (256-314)||(38043586-38043644)
chr5 (165-239)||(40837899-40837973)
chr5 (177-233)||(21657400-21657456)
chr5 (166-228)||(11637579-11637641)
chr5 (185-222)||(32622906-32622943)
chr5 (168-232)||(40155194-40155259)
chr5 (179-220)||(42515812-42515853)
chr5 (179-239)||(29695020-29695080)
chr5 (189-233)||(41117845-41117889)
[»] chr4 (16 HSPs)
chr4 (160-233)||(50668326-50668399)
chr4 (185-239)||(37725717-37725771)
chr4 (179-233)||(47704587-47704641)
chr4 (166-218)||(8415512-8415564)
chr4 (185-233)||(17058991-17059039)
chr4 (175-239)||(35050538-35050602)
chr4 (175-218)||(43020517-43020560)
chr4 (167-233)||(21623421-21623487)
chr4 (168-233)||(897419-897484)
chr4 (196-233)||(35576569-35576606)
chr4 (167-228)||(36478984-36479045)
chr4 (198-239)||(39606563-39606604)
chr4 (179-228)||(51465342-51465391)
chr4 (185-233)||(22411775-22411823)
chr4 (179-223)||(30780134-30780178)
chr4 (185-233)||(32711800-32711848)
[»] chr1 (11 HSPs)
chr1 (165-233)||(28219049-28219117)
chr1 (175-233)||(4806797-4806855)
chr1 (192-233)||(6491839-6491880)
chr1 (168-221)||(17188682-17188735)
chr1 (185-233)||(40735007-40735055)
chr1 (167-223)||(45190281-45190337)
chr1 (185-228)||(2613733-2613776)
chr1 (179-233)||(28460254-28460308)
chr1 (180-233)||(7803411-7803464)
chr1 (179-220)||(16580814-16580855)
chr1 (167-220)||(24529678-24529731)
[»] chr8 (7 HSPs)
chr8 (196-239)||(17641856-17641899)
chr8 (172-233)||(37141355-37141416)
chr8 (185-233)||(30694441-30694489)
chr8 (186-232)||(41472490-41472536)
chr8 (179-228)||(21557438-21557487)
chr8 (175-219)||(5830313-5830357)
chr8 (193-221)||(20700189-20700217)
[»] chr7 (10 HSPs)
chr7 (175-233)||(27279405-27279463)
chr7 (175-228)||(24225988-24226041)
chr7 (184-228)||(7908603-7908647)
chr7 (165-221)||(21136822-21136878)
chr7 (192-239)||(30397087-30397134)
chr7 (179-220)||(36428153-36428194)
chr7 (196-228)||(9021046-9021078)
chr7 (175-223)||(10317264-10317312)
chr7 (175-223)||(27263342-27263390)
chr7 (175-223)||(27270236-27270284)
[»] chr2 (8 HSPs)
chr2 (192-233)||(14735895-14735936)
chr2 (179-223)||(19189856-19189900)
chr2 (172-221)||(11817359-11817409)
chr2 (180-233)||(145013-145066)
chr2 (192-225)||(33067101-33067134)
chr2 (179-220)||(35404570-35404611)
chr2 (192-233)||(41542985-41543026)
chr2 (175-223)||(31837948-31837996)
[»] scaffold0021 (1 HSPs)
scaffold0021 (179-239)||(161146-161206)
[»] chr6 (5 HSPs)
chr6 (175-223)||(9244121-9244169)
chr6 (175-221)||(10497166-10497212)
chr6 (174-228)||(15062291-15062345)
chr6 (165-221)||(23507405-23507461)
chr6 (185-229)||(24269894-24269938)
[»] chr3 (7 HSPs)
chr3 (167-222)||(7757076-7757131)
chr3 (172-223)||(53221956-53222007)
chr3 (175-228)||(1743997-1744050)
chr3 (184-221)||(19126691-19126728)
chr3 (175-223)||(34325995-34326043)
chr3 (172-220)||(40520750-40520798)
chr3 (185-225)||(42269309-42269349)
[»] scaffold1160 (1 HSPs)
scaffold1160 (180-229)||(1718-1767)
[»] scaffold0568 (1 HSPs)
scaffold0568 (185-233)||(924-972)
[»] scaffold0011 (1 HSPs)
scaffold0011 (179-239)||(7727-7787)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38043323 - 38043545
Alignment:
Q  1 gatgaacaaaaatgtctaaattttataaaatatatttataatnnnnnnnnnnn-cacattatccattttaaaatggaaaatgcaataaaaactggcgcaa 99  Q
    ||||||| ||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||    
T  38043323 gatgaacgaaaatgtctaaattttataaaatatatttataataaaaaaaataaacacattatccattttaaaatggaaaatgcaataaaaactggcgcaa 38043422  T
Q  100 taaaccaaaatatccattttaaaggaatcaattttgggttttatgcactattaataaacgatttctatgtcttcatgaacttaattcagtttgtatggac 199  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  38043423 taaaccataatatccattttaaaggaatcaattttgggttttatgcactattaataaacgatttctatgtcttcgtgaacttaattcagtttgtatggat 38043522  T
Q  200 aatgtataaaatatgtaaggttc 222  Q
    |||| ||||||||||||||||||    
T  38043523 aatgcataaaatatgtaaggttc 38043545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 38043586 - 38043644
Alignment:
Q  256 tttctataatgatacttcatacttttgcaactcatacatatctgctctaaatctaatgt 314  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||    
T  38043586 tttctataacgatacttcatacttttacaactcatacatatctgctccaaatctaatgt 38043644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 40837973 - 40837899
Alignment:
Q  165 tatgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaacaccgac 239  Q
    |||||| || ||||||||| |||||| ||||||||||| ||||||||||| ||||| || |||| |||| |||||    
T  40837973 tatgtcctcgtgaacttaactcagttggtatggacaatatataaaatatgcaaggtccggggttcaaaccccgac 40837899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 21657456 - 21657400
Alignment:
Q  177 aacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    |||||| ||||||||||| |||||||| |||| |||||||||||| |||||| ||||    
T  21657456 aacttagttcagtttgtagggacaatgcataatatatgtaaggtttgaggttcaaac 21657400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 11637641 - 11637579
Alignment:
Q  166 atgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 228  Q
    ||||| || ||| ||||| |||||| |||||||||||| |||||||||| |||||||| ||||    
T  11637641 atgtcctcgtgagcttaactcagttggtatggacaatgcataaaatatgcaaggttcggggtt 11637579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 32622906 - 32622943
Alignment:
Q  185 tcagtttgtatggacaatgtataaaatatgtaaggttc 222  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  32622906 tcagttggtatggacaatgtataaaatatgcaaggttc 32622943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 40155259 - 40155194
Alignment:
Q  168 gtcttcatgaacttaattcagtttgtatggacaatgtat-aaaatatgtaaggttcgaggtttaaa 232  Q
    |||||| ||| ||||  |||||| ||||||||||||||| |||||||||| |||||| ||||||||    
T  40155259 gtcttcgtgagcttatctcagttggtatggacaatgtataaaaatatgtatggttcggggtttaaa 40155194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 42515812 - 42515853
Alignment:
Q  179 cttaattcagtttgtatggacaatgtataaaatatgtaaggt 220  Q
    |||||||||||| |||||||||||| |||| |||||||||||    
T  42515812 cttaattcagttggtatggacaatgcataatatatgtaaggt 42515853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 29695020 - 29695080
Alignment:
Q  179 cttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaacaccgac 239  Q
    ||||| ||||||  ||||||||||| |||| |||||||||||||| |||| |||| |||||    
T  29695020 cttaactcagttgatatggacaatgcataatatatgtaaggttcgtggttcaaaccccgac 29695080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 41117845 - 41117889
Alignment:
Q  189 tttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    ||||||| | |||||||||||||||| ||||||||||||| ||||    
T  41117845 tttgtatagtcaatgtataaaatatgcaaggttcgaggttcaaac 41117889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 50668326 - 50668399
Alignment:
Q  160 atttctatgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    |||| ||||||||| |||||||||||||||| ||||| |||||  |||| |||||||||||||| |||| ||||    
T  50668326 atttttatgtcttcgtgaacttaattcagttggtatgaacaatacataatatatgtaaggttcggggttcaaac 50668399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 37725771 - 37725717
Alignment:
Q  185 tcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaacaccgac 239  Q
    |||||||||  ||||||||||||||||||| |||||||| ||||||||| |||||    
T  37725771 tcagtttgttgggacaatgtataaaatatgcaaggttcggggtttaaaccccgac 37725717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 47704587 - 47704641
Alignment:
Q  179 cttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    ||||| |||||| ||||| | ||||||||| ||||||||||||||||||||||||    
T  47704587 cttaactcagttggtatgaataatgtataatatatgtaaggttcgaggtttaaac 47704641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 8415564 - 8415512
Alignment:
Q  166 atgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaag 218  Q
    ||||| |||||| |||||||||||| |||||||||||| |||| |||||||||    
T  8415564 atgtcctcatgagcttaattcagttggtatggacaatgcataatatatgtaag 8415512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 17059039 - 17058991
Alignment:
Q  185 tcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    |||||| ||||| ||||| ||||||||||| ||||||||||||||||||    
T  17059039 tcagttggtatgaacaatatataaaatatgcaaggttcgaggtttaaac 17058991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 35050602 - 35050538
Alignment:
Q  175 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaacaccgac 239  Q
    |||||||||||||||| ||||| ||||| ||||| |||||||||||| || ||| |||| |||||    
T  35050602 tgaacttaattcagttggtatgtacaatttataatatatgtaaggtttgaagttcaaaccccgac 35050538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 43020517 - 43020560
Alignment:
Q  175 tgaacttaattcagtttgtatggacaatgtataaaatatgtaag 218  Q
    |||||||| ||||||| | |||||||||||||||||||||||||    
T  43020517 tgaacttagttcagttgggatggacaatgtataaaatatgtaag 43020560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 21623487 - 21623421
Alignment:
Q  167 tgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    ||||||| |||||||| ||||||| ||| |||||||| |||| ||||| |||||  |||||||||||    
T  21623487 tgtcttcgtgaacttagttcagttggtagggacaatgcataatatatgcaaggtctgaggtttaaac 21623421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 897419 - 897484
Alignment:
Q  168 gtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    ||||||||||  |||  |||||| ||||||||||||||||| ||||||||||| || |||| ||||    
T  897419 gtcttcatgagtttagctcagttggtatggacaatgtataatatatgtaaggtccggggttcaaac 897484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 35576569 - 35576606
Alignment:
Q  196 ggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  35576569 ggacaatgtataaaatatgcaaggtccgaggtttaaac 35576606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 36478984 - 36479045
Alignment:
Q  167 tgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 228  Q
    |||| |||||| ||||  || ||| |||||||||||| |||| |||||||||||||||||||    
T  36478984 tgtcctcatgagcttagctctgttggtatggacaatgcataatatatgtaaggttcgaggtt 36479045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 39606604 - 39606563
Alignment:
Q  198 acaatgtataaaatatgtaaggttcgaggtttaaacaccgac 239  Q
    |||||||||||||||||||| |||||||||| |||| |||||    
T  39606604 acaatgtataaaatatgtaaagttcgaggttcaaaccccgac 39606563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 51465342 - 51465391
Alignment:
Q  179 cttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 228  Q
    |||||||||||| |||||||||||| |||| |||||||||| ||| ||||    
T  51465342 cttaattcagttggtatggacaatgcataatatatgtaagggtcggggtt 51465391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 22411775 - 22411823
Alignment:
Q  185 tcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    |||||| |||||||||||| |||| |||||||||||||| |||| ||||    
T  22411775 tcagttggtatggacaatgcataatatatgtaaggttcggggttcaaac 22411823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 30780134 - 30780178
Alignment:
Q  179 cttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 223  Q
    ||||| |||||| |||||||||||| ||||||||| |||||||||    
T  30780134 cttaactcagttggtatggacaatgcataaaatatataaggttcg 30780178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 32711848 - 32711800
Alignment:
Q  185 tcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    |||||| |||||||||||| |||||||||| | ||| ||||||||||||    
T  32711848 tcagttggtatggacaatgcataaaatatgcatggtccgaggtttaaac 32711800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 28219117 - 28219049
Alignment:
Q  165 tatgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    ||||||||| ||||||||||||| ||  || ||||||||||||| ||||||||||| | ||||||||||    
T  28219117 tatgtcttcttgaacttaattcaattgatagggacaatgtataatatatgtaaggtccaaggtttaaac 28219049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 4806855 - 4806797
Alignment:
Q  175 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    |||||||||||||||| |||  |||||||||||| |||||||||||| |||||| ||||    
T  4806855 tgaacttaattcagttggtagagacaatgtataatatatgtaaggtttgaggttcaaac 4806797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 6491880 - 6491839
Alignment:
Q  192 gtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  6491880 gtatggacaatgtataatatatgtaaggttcggggtttaaac 6491839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 17188735 - 17188682
Alignment:
Q  168 gtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggtt 221  Q
    |||||||||| ||||  |||||| |||||||||||| |||||||||||||||||    
T  17188735 gtcttcatgagcttagctcagttggtatggacaatgcataaaatatgtaaggtt 17188682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 40735055 - 40735007
Alignment:
Q  185 tcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    |||||| |||||||||||| ||||||||||||||||||| |||| ||||    
T  40735055 tcagttagtatggacaatgcataaaatatgtaaggttcggggttcaaac 40735007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 45190337 - 45190281
Alignment:
Q  167 tgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 223  Q
    ||||||| |||||||| ||||||| |||||||||||| |||| ||||| ||||||||    
T  45190337 tgtcttcgtgaacttagttcagttggtatggacaatgcataatatatgcaaggttcg 45190281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 2613733 - 2613776
Alignment:
Q  185 tcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 228  Q
    |||||| |||||||||||| ||||||||||||||||||| ||||    
T  2613733 tcagttggtatggacaatgcataaaatatgtaaggttcggggtt 2613776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 28460254 - 28460308
Alignment:
Q  179 cttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    |||| ||||||| ||||| ||||||||||||||||| |||||| |||||| ||||    
T  28460254 cttagttcagttcgtatgaacaatgtataaaatatggaaggtttgaggttcaaac 28460308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 7803411 - 7803464
Alignment:
Q  180 ttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    |||| |||||||||||||||||||||||| ||||| |||||  |||||| ||||    
T  7803411 ttaactcagtttgtatggacaatgtataatatatgcaaggtctgaggttcaaac 7803464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 16580855 - 16580814
Alignment:
Q  179 cttaattcagtttgtatggacaatgtataaaatatgtaaggt 220  Q
    |||||||||||| ||||||||||||||||| ||||| |||||    
T  16580855 cttaattcagttggtatggacaatgtataatatatgcaaggt 16580814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 24529678 - 24529731
Alignment:
Q  167 tgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggt 220  Q
    |||| |||||| ||||| |||||| ||||||||| || ||||||||||||||||    
T  24529678 tgtcctcatgagcttaactcagttagtatggacattgcataaaatatgtaaggt 24529731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 17641899 - 17641856
Alignment:
Q  196 ggacaatgtataaaatatgtaaggttcgaggtttaaacaccgac 239  Q
    ||||||||||||||||||| |||||||||||||||||| |||||    
T  17641899 ggacaatgtataaaatatgcaaggttcgaggtttaaactccgac 17641856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 37141355 - 37141416
Alignment:
Q  172 tcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    |||| |||||||||||||| |||||||||||| |||| ||||| |||||||| |||| ||||    
T  37141355 tcataaacttaattcagttggtatggacaatgcataatatatgcaaggttcggggttcaaac 37141416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 30694489 - 30694441
Alignment:
Q  185 tcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    |||||||||||| |||||| |||||||||| |||||||| |||||||||    
T  30694489 tcagtttgtatgaacaatgcataaaatatgcaaggttcggggtttaaac 30694441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 41472490 - 41472536
Alignment:
Q  186 cagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaa 232  Q
    ||||| ||||| ||||||||||| ||||| |||||||||||||||||    
T  41472490 cagttagtatgaacaatgtataatatatgcaaggttcgaggtttaaa 41472536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 21557438 - 21557487
Alignment:
Q  179 cttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 228  Q
    ||||| |||||| |||||||||||| |||| ||||||||||| |||||||    
T  21557438 cttaactcagttagtatggacaatgcataatatatgtaaggtccgaggtt 21557487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 5830357 - 5830313
Alignment:
Q  175 tgaacttaattcagtttgtatggacaatgtataaaatatgtaagg 219  Q
    ||||||||||| |||| ||||| ||||||||||| ||||||||||    
T  5830357 tgaacttaatttagttggtatgaacaatgtataatatatgtaagg 5830313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 20700189 - 20700217
Alignment:
Q  193 tatggacaatgtataaaatatgtaaggtt 221  Q
    |||||||||||||||||||||||||||||    
T  20700189 tatggacaatgtataaaatatgtaaggtt 20700217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 27279463 - 27279405
Alignment:
Q  175 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    |||||||| ||||||| |||| |||||||||||| |||||||||||| |||||| ||||    
T  27279463 tgaacttagttcagttagtatagacaatgtataatatatgtaaggtttgaggttcaaac 27279405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 24226041 - 24225988
Alignment:
Q  175 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 228  Q
    ||||||||  |||||| |||||||||||| |||||||||||||||| |||||||    
T  24226041 tgaacttagctcagttcgtatggacaatgcataaaatatgtaaggtccgaggtt 24225988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 7908603 - 7908647
Alignment:
Q  184 ttcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 228  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||||    
T  7908603 ttcagttggtatggacaatgcataaaatatgtaaggttcggggtt 7908647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 21136822 - 21136878
Alignment:
Q  165 tatgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggtt 221  Q
    ||||||||| ||| ||||| |||||| ||||||||||||||||| ||||| ||||||    
T  21136822 tatgtcttcgtgagcttaactcagttggtatggacaatgtataatatatgcaaggtt 21136878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 30397087 - 30397134
Alignment:
Q  192 gtatggacaatgtataaaatatgtaaggttcgaggtttaaacaccgac 239  Q
    |||||||||||| ||||||||||||||||||| ||||| ||| |||||    
T  30397087 gtatggacaatgcataaaatatgtaaggttcggggtttgaaccccgac 30397134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 36428153 - 36428194
Alignment:
Q  179 cttaattcagtttgtatggacaatgtataaaatatgtaaggt 220  Q
    ||||| |||||| ||||||||||||||||||||||| |||||    
T  36428153 cttaactcagttggtatggacaatgtataaaatatgcaaggt 36428194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 9021078 - 9021046
Alignment:
Q  196 ggacaatgtataaaatatgtaaggttcgaggtt 228  Q
    ||||||||||||||||||||||||| |||||||    
T  9021078 ggacaatgtataaaatatgtaaggtccgaggtt 9021046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 10317264 - 10317312
Alignment:
Q  175 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 223  Q
    ||||||||| ||||||  ||||||||| | |||||||||||||||||||    
T  10317264 tgaacttaactcagttaatatggacaaggcataaaatatgtaaggttcg 10317312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 27263342 - 27263390
Alignment:
Q  175 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 223  Q
    ||||||||| |||||| |||||||||||| |||| ||||| ||||||||    
T  27263342 tgaacttaactcagttggtatggacaatgcataatatatgcaaggttcg 27263390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 27270236 - 27270284
Alignment:
Q  175 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 223  Q
    ||||||||| |||||| |||||||||||| |||| ||||| ||||||||    
T  27270236 tgaacttaactcagttggtatggacaatgcataatatatgcaaggttcg 27270284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 14735936 - 14735895
Alignment:
Q  192 gtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    |||||||||||| |||||||||||||||||||||||| ||||    
T  14735936 gtatggacaatgcataaaatatgtaaggttcgaggttcaaac 14735895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 19189900 - 19189856
Alignment:
Q  179 cttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 223  Q
    ||||| |||||| ||||||||||||||||||||||| ||||||||    
T  19189900 cttaactcagttagtatggacaatgtataaaatatgcaaggttcg 19189856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 11817409 - 11817359
Alignment:
Q  172 tcatgaacttaattcagtttgtatggacaatgtataa-aatatgtaaggtt 221  Q
    |||||| ||||| |||||| ||||||||||||||||| |||||||||||||    
T  11817409 tcatgagcttaactcagttggtatggacaatgtataataatatgtaaggtt 11817359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 145066 - 145013
Alignment:
Q  180 ttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    |||| |||||| |||||||||||| |||| |||||||||||||  |||||||||    
T  145066 ttaactcagttggtatggacaatgcataatatatgtaaggttcagggtttaaac 145013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 33067101 - 33067134
Alignment:
Q  192 gtatggacaatgtataaaatatgtaaggttcgag 225  Q
    ||||||| ||||||||||||||||||||||||||    
T  33067101 gtatggataatgtataaaatatgtaaggttcgag 33067134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 35404611 - 35404570
Alignment:
Q  179 cttaattcagtttgtatggacaatgtataaaatatgtaaggt 220  Q
    |||| ||||||| ||||| |||||||||||||||||||||||    
T  35404611 cttagttcagttggtatgaacaatgtataaaatatgtaaggt 35404570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 41543026 - 41542985
Alignment:
Q  192 gtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    |||||||||||| |||| |||||||||||||| |||||||||    
T  41543026 gtatggacaatgcataatatatgtaaggttcggggtttaaac 41542985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 31837996 - 31837948
Alignment:
Q  175 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 223  Q
    ||||||||| ||| || ||||||| ||||||||| ||||||||||||||    
T  31837996 tgaacttaactcaattggtatggataatgtataatatatgtaaggttcg 31837948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 161146 - 161206
Alignment:
Q  179 cttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaacaccgac 239  Q
    ||||| |||||| |||||||||||| |||||||||| |||||||| |||| |||| |||||    
T  161146 cttaactcagttggtatggacaatgcataaaatatgcaaggttcggggttcaaaccccgac 161206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 9244169 - 9244121
Alignment:
Q  175 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 223  Q
    ||||||||| |||||| ||||| |||||| |||||||||||||||||||    
T  9244169 tgaacttaactcagttggtatgaacaatgaataaaatatgtaaggttcg 9244121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 10497212 - 10497166
Alignment:
Q  175 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggtt 221  Q
    ||||||||| |||||||||| |||||||| |||| ||||||||||||    
T  10497212 tgaacttaactcagtttgtaaggacaatgcataatatatgtaaggtt 10497166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 15062291 - 15062345
Alignment:
Q  174 atgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 228  Q
    ||||||||| ||||||| ||| | |||||| ||||||||||||||||||| ||||    
T  15062291 atgaacttagttcagttggtaagtacaatgcataaaatatgtaaggttcggggtt 15062345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 23507461 - 23507405
Alignment:
Q  165 tatgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggtt 221  Q
    |||||| || |||||||| ||||||| ||| |||||||  |||||||||||||||||    
T  23507461 tatgtcctcgtgaacttagttcagttggtaaggacaatacataaaatatgtaaggtt 23507405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 24269894 - 24269938
Alignment:
Q  185 tcagtttgtatggacaatgtataaaatatgtaaggttcgaggttt 229  Q
    |||||| |||||||||||| |||||||||| |||||||| |||||    
T  24269894 tcagttagtatggacaatgcataaaatatgcaaggttcggggttt 24269938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 7757076 - 7757131
Alignment:
Q  167 tgtcttcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttc 222  Q
    |||| |||||| |||| ||||||| ||||||||||| ||||||||||| |||||||    
T  7757076 tgtcctcatgagcttagttcagttggtatggacaatatataaaatatgcaaggttc 7757131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 53221956 - 53222007
Alignment:
Q  172 tcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 223  Q
    |||||||||||| ||||||  || ||||||||||||| ||||||||||||||    
T  53221956 tcatgaacttaactcagttgataaggacaatgtataatatatgtaaggttcg 53222007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 1744050 - 1743997
Alignment:
Q  175 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtt 228  Q
    |||||||||||||||| |||||||||||  |||| ||||| |||||||| ||||    
T  1744050 tgaacttaattcagttggtatggacaatacataatatatgcaaggttcggggtt 1743997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 19126728 - 19126691
Alignment:
Q  184 ttcagtttgtatggacaatgtataaaatatgtaaggtt 221  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  19126728 ttcagttggtatggacaatgcataaaatatgtaaggtt 19126691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 34326043 - 34325995
Alignment:
Q  175 tgaacttaattcagtttgtatggacaatgtataaaatatgtaaggttcg 223  Q
    |||||||||||||||| |||||||||||| |||| ||||| || |||||    
T  34326043 tgaacttaattcagttggtatggacaatgcataatatatgcaatgttcg 34325995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 40520750 - 40520798
Alignment:
Q  172 tcatgaacttaattcagtttgtatggacaatgtataaaatatgtaaggt 220  Q
    |||||| ||||| |||||||||||||| |||| |||||||||| |||||    
T  40520750 tcatgagcttaactcagtttgtatggataatgcataaaatatgcaaggt 40520798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 42269309 - 42269349
Alignment:
Q  185 tcagtttgtatggacaatgtataaaatatgtaaggttcgag 225  Q
    |||||| |||||||||||| |||| ||||||||||||||||    
T  42269309 tcagttagtatggacaatgcataatatatgtaaggttcgag 42269349  T

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Target: scaffold1160 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 1767 - 1718
Alignment:
Q  180 ttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggttt 229  Q
    |||| |||||| ||| |||||||| |||||||||| ||||||||||||||    
T  1767 ttaactcagttggtagggacaatgcataaaatatgcaaggttcgaggttt 1718  T

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Target: scaffold0568 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 972 - 924
Alignment:
Q  185 tcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaac 233  Q
    |||||| ||||| ||||| ||||||||||| |||||||||| |||||||    
T  972 tcagttggtatgaacaatatataaaatatgcaaggttcgagatttaaac 924  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 7727 - 7787
Alignment:
Q  179 cttaattcagtttgtatggacaatgtataaaatatgtaaggttcgaggtttaaacaccgac 239  Q
    ||||| |||||| |||||||||||| |||||| ||| ||||| ||||||| |||| |||||    
T  7727 cttaactcagttggtatggacaatgcataaaacatgcaaggtccgaggttcaaaccccgac 7787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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