View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17455_high_24 (Length: 210)

Name: NF17455_high_24
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17455_high_24
NF17455_high_24
[»] chr8 (5 HSPs)
chr8 (19-191)||(291964-292136)
chr8 (19-191)||(9506792-9506964)
chr8 (19-179)||(268753-268913)
chr8 (19-179)||(647008-647168)
chr8 (19-179)||(832743-832903)
[»] chr7 (1 HSPs)
chr7 (19-191)||(12860403-12860575)
[»] chr3 (3 HSPs)
chr3 (28-180)||(2294581-2294733)
chr3 (19-191)||(17778114-17778286)
chr3 (19-191)||(19079415-19079587)
[»] chr2 (4 HSPs)
chr2 (19-191)||(19388459-19388631)
chr2 (19-191)||(18599671-18599843)
chr2 (19-191)||(18605170-18605342)
chr2 (19-191)||(29560978-29561150)
[»] chr6 (2 HSPs)
chr6 (19-191)||(19888641-19888813)
chr6 (19-191)||(19823552-19823724)
[»] chr1 (3 HSPs)
chr1 (19-191)||(139298-139470)
chr1 (19-191)||(164698-164870)
chr1 (19-191)||(18214750-18214922)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 291964 - 292136
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  291964 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 292063  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatcactaaggaagatt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  292064 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatcactaaggaagatt 292136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 9506792 - 9506964
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  9506792 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacgacaaaaccggttaattgtacttataatgatttggcaggtgagtttgct 9506891  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatcactaaggaagatt 191  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9506892 tatggatctgggaatgtcaatccaaaacaagctattgaccctggacttgtttatgacatcactaaggaagatt 9506964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 268753 - 268913
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    |||||||||||||||||| || ||| ||||||||||||||||||||||||| ||  |||| || || ||||||||| |||||||||  ||||||||||||    
T  268753 atttcatccagattggtcacctgcagctatcaaatctgccatcatgaccactgcggaaccagtgaaaggtacttatgatgatttggtgggtgagtttgct 268852  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatca 179  Q
    |||||||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||    
T  268853 tatggatctgggaatgtcaacccacaacaagctgttcatcctggacttgtttatgacatca 268913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 647168 - 647008
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    |||||||||||||||||| || ||| ||||||||||||||||||||||||| ||  |||| || || ||||||||| |||||||||  ||||||||||||    
T  647168 atttcatccagattggtcacctgcagctatcaaatctgccatcatgaccactgcggaaccagtgaaaggtacttatgatgatttggtgggtgagtttgct 647069  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatca 179  Q
    |||||||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||    
T  647068 tatggatctgggaatgtcaacccacaacaagctgttcatcctggacttgtttatgacatca 647008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 832903 - 832743
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    |||||||||||||||||| || ||| ||||||||||||||||||||||||| ||  |||| || || ||||||||| |||||||||  ||||||||||||    
T  832903 atttcatccagattggtcacctgcagctatcaaatctgccatcatgaccactgcggaaccagtgaaaggtacttatgatgatttggtgggtgagtttgct 832804  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatca 179  Q
    |||||||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||    
T  832803 tatggatctgggaatgtcaacccacaacaagctgttcatcctggacttgtttatgacatca 832743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 12860575 - 12860403
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    ||||||||| |||||||| || ||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||||||    
T  12860575 atttcatcccgattggtcacccgcagctatcaaatctgccatcatgaccacggcgaaaccggtgaatggtacttataatgatatggtaggtgagtttgct 12860476  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatcactaaggaagatt 191  Q
    ||||||||||| |||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||    
T  12860475 tatggatctggaaatgtcaatccacaacaagttgctgaccctggacttgtttatgacatcactaaggaagatt 12860403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 4e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 2294581 - 2294733
Alignment:
Q  28 agattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgcttatggatct 127  Q
    ||||||||| || ||| |||||||||||||||||||||| || || ||||| || || |||| |||| ||||||| ||||||||||||||||||||||||    
T  2294581 agattggtcacctgcagctatcaaatctgccatcatgacaactgctaaaccagtgaaaggtagttatgatgatttagcaggtgagtttgcttatggatct 2294680  T
Q  128 gggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatcac 180  Q
    |||||| |||||||| |||||||| || |||||||||||||||||||||||||    
T  2294681 gggaatatcaatccacaacaagctcttcaccctggacttgtttatgacatcac 2294733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 17778286 - 17778114
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    ||||||||| |||||||| || ||| |||| ||||||||||||||||| ||  | || || || || |||  |||| |||||||||| ||||||||||||    
T  17778286 atttcatcccgattggtcacctgcagctattaaatctgccatcatgacaacaactaagccagtgaaaggtcattatgatgatttggctggtgagtttgct 17778187  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatcactaaggaagatt 191  Q
    ||||||||||||||| |||||||| |||||||  || ||||||||||||||||||| || |||||| ||||||    
T  17778186 tatggatctgggaatatcaatccacaacaagccattcaccctggacttgtttatgatattactaagcaagatt 17778114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 19079587 - 19079415
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    ||||||||| |||||||| || ||| |||| ||||||||||||||||| ||  | || || || || |||  |||| |||||||||| ||||||||||||    
T  19079587 atttcatcccgattggtcacctgcagctattaaatctgccatcatgacaacaactaagccagtgaaaggtcattatgatgatttggctggtgagtttgct 19079488  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatcactaaggaagatt 191  Q
    ||||||||||||||| |||||||| |||||||  || ||||||||||||||||||| || |||||| ||||||    
T  19079487 tatggatctgggaatatcaatccacaacaagccattcaccctggacttgtttatgatattactaagcaagatt 19079415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 4e-43; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 19388459 - 19388631
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    |||||||||||||||||| || ||| ||||||||||||| |||||||| ||  | | ||| || || ||||||||| ||||||||| |||||||||||||    
T  19388459 atttcatccagattggtcacctgcagctatcaaatctgctatcatgacaactactacaccagtgaaaggtacttatgatgatttggtaggtgagtttgct 19388558  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatcactaaggaagatt 191  Q
    |||||||| |||||| ||||||||||||||||  |||| |||||||||||||||||||| |||||| ||||||    
T  19388559 tatggatcagggaatatcaatccaaaacaagccattgagcctggacttgtttatgacattactaagcaagatt 19388631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 18599671 - 18599843
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    |||||||| ||||||||| ||  || ||||||||||||| |||||||| || || | ||| || || ||||||||| ||||||| | |||||||||||||    
T  18599671 atttcatctagattggtcacctacagctatcaaatctgctatcatgacaactgctacaccagtgaaaggtacttatgatgattttgtaggtgagtttgct 18599770  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatcactaaggaagatt 191  Q
    |||||||| |||||| ||||||||||||||||  || |||||||||||||||||||||| |||||| ||||||    
T  18599771 tatggatcagggaatatcaatccaaaacaagccattcaccctggacttgtttatgacattactaagcaagatt 18599843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 18605170 - 18605342
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    |||||||||||||||||| || ||| ||||||||||||| |||||||| || || | ||| || ||  |||||||| ||||| |||||||||||||||||    
T  18605170 atttcatccagattggtcacctgcagctatcaaatctgctatcatgacaactgctacaccagtgaaacgtacttatgatgatatggcaggtgagtttgct 18605269  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatcactaaggaagatt 191  Q
    |||||||| || ||| ||||||||||||||||  || |||||| ||||||||||||||| |||||| ||||||    
T  18605270 tatggatcaggaaatatcaatccaaaacaagccattcaccctgtacttgtttatgacattactaagcaagatt 18605342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 29560978 - 29561150
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    ||||||||| |||||||| || ||| || ||||||||||||||||||| ||  | || || ||||| |||  |||| |||||||||||||||||||||||    
T  29560978 atttcatcctgattggtcacctgcagctctcaaatctgccatcatgacaaccactaagccagttaaaggtcattatgatgatttggcaggtgagtttgct 29561077  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatcactaaggaagatt 191  Q
    ||||||||||||||| |||||||| |||||||  ||  ||| |||||||||||||| || || ||| ||||||    
T  29561078 tatggatctgggaatatcaatccacaacaagccattccccccggacttgtttatgatattacgaagcaagatt 29561150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 19888641 - 19888813
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    |||||||||| ||||||| || ||| |||||||||||||||||||||| || || || |  || || ||| ||||| |||||||||| || |||||||||    
T  19888641 atttcatccaaattggtcacctgcagctatcaaatctgccatcatgacaaccgctaacctagtgaaaggtccttatgatgatttggctggagagtttgct 19888740  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatcactaaggaagatt 191  Q
    ||||||||||||||| |||||||| |||||||  || ||||||||||||||||||||||||||||||| ||||    
T  19888741 tatggatctgggaatatcaatccacaacaagcccttaaccctggacttgtttatgacatcactaaggaggatt 19888813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 19823552 - 19823724
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    |||||||||| ||||||| || ||| |||||||||||||||||||||| || || |  |  || || ||| ||||| |||||||||| || |||||||||    
T  19823552 atttcatccaaattggtcacctgcagctatcaaatctgccatcatgacaactgctaccctagtgaaaggtccttatgatgatttggctggagagtttgct 19823651  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatcactaaggaagatt 191  Q
    ||||||||||||||| |||||||| |||||||  || ||||||| ||||||||||||||||||||||| ||||    
T  19823652 tatggatctgggaatatcaatccacaacaagccattaaccctgggcttgtttatgacatcactaaggaggatt 19823724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 139470 - 139298
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    |||||||||||||||||| || ||| |||| ||||| || |||||||| || || | | |  | || ||||||||| |||||||||| ||||| ||||||    
T  139470 atttcatccagattggtcacctgcagctataaaatccgctatcatgacaactgctacaacaatgaaaggtacttatgatgatttggctggtgaatttgct 139371  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatcactaaggaagatt 191  Q
    ||||||||||| ||| |||||||| |||||||  || ||||||||||||||||||||||||||||| ||||||    
T  139370 tatggatctggtaatatcaatccacaacaagcccttcaccctggacttgtttatgacatcactaagcaagatt 139298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 164870 - 164698
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    |||||||||||||||||| || |||||||| ||||| || |||||||| || || | | |  | ||  |||||||| ||||| |||| ||||| ||||||    
T  164870 atttcatccagattggtcacctgcatctataaaatccgctatcatgacaactgctacaacaatgaaaagtacttatgatgatatggctggtgaatttgct 164771  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatcactaaggaagatt 191  Q
    ||||||||||| ||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  164770 tatggatctggtaatatcaatccacaacaagccgttcaccctggacttgtttatgacatcactaagcaagatt 164698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 18214750 - 18214922
Alignment:
Q  19 atttcatccagattggtcgccagcatctatcaaatctgccatcatgaccacggcaaaaccggttaatggtacttataatgatttggcaggtgagtttgct 118  Q
    ||||||||| |||||||| || ||| |||| |||||||| |||||||| || || | |||  | || ||||||||| |||||||||  ||||||||||||    
T  18214750 atttcatcctgattggtcacctgcagctataaaatctgctatcatgacaacagctacaccaatgaaaggtacttatgatgatttggttggtgagtttgct 18214849  T
Q  119 tatggatctgggaatgtcaatccaaaacaagctgttgaccctggacttgtttatgacatcactaaggaagatt 191  Q
    ||||| || |||||| |||||||| |||||||  || ||||||||||| |||||||||| || ||| ||||||    
T  18214850 tatgggtcggggaatatcaatccacaacaagccattcaccctggacttatttatgacattacaaagaaagatt 18214922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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