View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17455_high_4 (Length: 481)
Name: NF17455_high_4
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17455_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 37140021 - 37140481
Alignment:
| Q |
1 |
gtcaacaaggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacacaccactctcaatcctgtaataataacactc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37140021 |
gtcaacaaggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacacaccactctcaatcctgtaataataacactc |
37140120 |
T |
|
| Q |
101 |
tcttaacaacatttcatttgtttcactttctctttcttattttatgctatagatatttgaacaaatagaatggaaaaaa-tagtgatcattttattagtt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
37140121 |
tcttaacaacatttcatttgtttcactttctctttcttattttatgctatagatatttgaacaaatagaatggaaaaaaatagtgatcattttattagat |
37140220 |
T |
|
| Q |
200 |
aaagatttttatcatgcaatacatggggggaaccttcaatttcatccgtttttctcaaattttaggggaagaacattggaatgatatacat--ctatgnn |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
37140221 |
-----tttttatcatgcaatacatggggggaaccttcaatttcatccggttttctcaaattttaggggaagaacattggaatgatatatatatctatgaa |
37140315 |
T |
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| Q |
298 |
nnnnngaactatactataagtttatatatattgctggttataaatatttttctttttggtatatctcattaatcatgtattgccaaaatctgcagaaaca |
397 |
Q |
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| T |
37140316 |
aaaaagaactatactataagtttatatatattgctggttataaatatttttctttttggtatatctcattaatcatgtattgccaaaatctgcagaaaca |
37140415 |
T |
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| Q |
398 |
gaaactggctctggcaaagcaattaaatcttcgtccacgtcaagtagaagtttggtttcagaatag |
463 |
Q |
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| T |
37140416 |
gaaactggctctggcaaagcaattaaatcttcgtccacgtcaagtagaagtttggtttcagaatag |
37140481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 23335951 - 23336039
Alignment:
| Q |
1 |
gtcaacaaggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacacaccactctcaatcctgtaa |
89 |
Q |
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|||||| ||||||||||| ||||||||||| || ||||| |||||||||||||| || |||||||||||||||||||| |||||||||| |
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| T |
23335951 |
gtcaactaggaagaaactaagactctctaaagatcaatctgcttttcttgaagaaagtttcaaagaacacaccactcttaatcctgtaa |
23336039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 25902322 - 25902258
Alignment:
| Q |
5 |
acaaggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaaca |
69 |
Q |
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| T |
25902322 |
acaaggaagaaacttaggctctctaaggatcaatctgcttttcttgaagaaagtttcaaagaaca |
25902258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 40299685 - 40299733
Alignment:
| Q |
47 |
cttgaagatagcttcaaagaacacaccactctcaatcctgtaataataa |
95 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||| |||| |
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| T |
40299685 |
cttgaagaaagcttcaaagaacacagcactctcaatcctgtaatcataa |
40299733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 41452460 - 41452397
Alignment:
| Q |
8 |
aggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacaca |
71 |
Q |
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||||| ||||| ||||||||||| || ||||||||| |||||||||| | |||||||||||||| |
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| T |
41452460 |
aggaaaaaacttagactctctaaagaccaatcagctattcttgaagaaaccttcaaagaacaca |
41452397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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