View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17455_high_9 (Length: 352)
Name: NF17455_high_9
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17455_high_9 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 339
Target Start/End: Original strand, 21888641 - 21888986
Alignment:
| Q |
12 |
tgaacgaatgtttataactatgggcaatctacacctcataagtcggttttgtgaggctgtgttgggccgaaccaaaaatctaagaaacatataatcttgt |
111 |
Q |
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| T |
21888641 |
tgaacgaatgtttataactatgggcaatctacacctcataagtcggttttgtggggctgtgttgggccgaaccaaaaatctaagaaacatataatcttgt |
21888740 |
T |
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| Q |
112 |
ctctatatgcaatcaaaacttaaatgtcttaaaatcttccaatttaaaacccatataccaacaacaattaagccagcattgtataggacttgtttaatct |
211 |
Q |
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| T |
21888741 |
ctctatatgcaatcaaaacataaatgtcttaaaatcttccaatttaaaacccatatatcaacaacaattaagccagcattgtataggacttgtttaatct |
21888840 |
T |
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| Q |
212 |
tggatatgcttaacaaaaatgttgaatttccatacattcatttctatctct------------------aatggcttacttactctataaagaaagattc |
293 |
Q |
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| T |
21888841 |
tggatatgcttaacaaaaatgttgaatttccatacattcatttctatctcttctaattcaatataatacaatggcttacttactctataaagaaagattc |
21888940 |
T |
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| Q |
294 |
tacattgccaagataattgcaataaaaatacacacatataatatat |
339 |
Q |
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| T |
21888941 |
tacattgccaagataattgcaataaaagtacacacatataatatat |
21888986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 25137379 - 25137314
Alignment:
| Q |
20 |
tgtttataactatgggcaatctacacctcataagtcggttttgtgaggctgtgttgggccgaacca |
85 |
Q |
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| T |
25137379 |
tgtttataagtatgggcaatcctcacctcataagccggttttgtggggttgtgttaggcccaacca |
25137314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 14541015 - 14540963
Alignment:
| Q |
33 |
gggcaatctacacctcataagtcggttttgtgaggctgtgttgggccgaacca |
85 |
Q |
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| T |
14541015 |
gggcaatccacacctcataagtcggttttgtggggttgtgttaggcccaacca |
14540963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 18004173 - 18004106
Alignment:
| Q |
19 |
atgtttataactatgggcaatctacacctcataagtcggttttgtgaggctgtgttgggccgaaccaa |
86 |
Q |
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| T |
18004173 |
atgtttataagtgggggcaatcctcaccccataagtcggttttgtgaggttgtgttaggcccaaccaa |
18004106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 56467 - 56532
Alignment:
| Q |
20 |
tgtttataactatgggcaatctacacctcataagtcggttttgtgaggctgtgttgggccgaacca |
85 |
Q |
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| T |
56467 |
tgtttataactgtgggcaatcatcacctcacaagccggttttgtggggttgtgttaggcccaacca |
56532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 14783263 - 14783198
Alignment:
| Q |
20 |
tgtttataactatgggcaatctacacctcataagtcggttttgtgaggctgtgttgggccgaacca |
85 |
Q |
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| T |
14783263 |
tgtttataactgtgggcaatcatcacctcacaagccggttttgtggggttgtgttaggcccaacca |
14783198 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 21591803 - 21591855
Alignment:
| Q |
33 |
gggcaatctacacctcataagtcggttttgtgaggctgtgttgggccgaacca |
85 |
Q |
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||||||||| ||||||||||||||||||| || || |||||| |||| ||||| |
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| T |
21591803 |
gggcaatcttcacctcataagtcggttttatggggttgtgttaggcccaacca |
21591855 |
T |
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