View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17455_low_1 (Length: 1043)

Name: NF17455_low_1
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17455_low_1
NF17455_low_1
[»] chr4 (7 HSPs)
chr4 (312-1024)||(1634997-1635708)
chr4 (11-168)||(55205709-55205861)
chr4 (753-801)||(29672266-29672314)
chr4 (246-306)||(50348193-50348253)
chr4 (758-797)||(20850846-20850885)
chr4 (241-304)||(22536909-22536972)
chr4 (757-796)||(30252114-30252153)
[»] chr7 (8 HSPs)
chr7 (11-163)||(46164545-46164697)
chr7 (11-161)||(10091632-10091779)
chr7 (241-311)||(46169358-46169428)
chr7 (11-162)||(46513375-46513522)
chr7 (11-121)||(26339834-26339945)
chr7 (241-304)||(10092351-10092414)
chr7 (241-306)||(46513595-46513660)
chr7 (241-283)||(46164427-46164469)
[»] chr1 (7 HSPs)
chr1 (11-163)||(48986130-48986282)
chr1 (241-312)||(48990944-48991015)
chr1 (241-315)||(48985980-48986054)
chr1 (248-311)||(25492045-25492108)
chr1 (241-304)||(52432980-52433043)
chr1 (748-795)||(39909808-39909855)
chr1 (241-283)||(19880772-19880814)
[»] chr5 (2 HSPs)
chr5 (758-801)||(5033553-5033596)
chr5 (241-304)||(8740448-8740511)
[»] chr3 (1 HSPs)
chr3 (758-798)||(43487277-43487317)


Alignment Details
Target: chr4 (Bit Score: 623; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 312 - 1024
Target Start/End: Original strand, 1634997 - 1635708
Alignment:
Q  312 atttatgatgttctttggattggttttgaggtaaatagttattaaaagcaaaccgaaactgcatgtgatttatatttttgattaaacgactttttgtttt 411  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1634997 atttatgatattctttggattggttttgaggtaaatagttattaaaagcaaaccgaaactgcatgtgatttatatttttgattaaacgactttttgtttt 1635096  T
Q  412 aaaaccaattcaaatcgcaccgcaaacatcctaatttatgacgagtcattattagcttgtgcaccagtcacgacctgagattggattgtgacacttgact 511  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1635097 aaaaccaatccaaaccgcaccgcaaacatcctaatttatgacgagtcattattagcttgtgcaccagtcacgacctgagattggattgtgacacttgact 1635196  T
Q  512 tctttaaaatatttgtgatataaatcttaagtcttcatttagaagatccataatcatcggtgaagctagtcattttcccatgagtggaccaaatctaaaa 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  1635197 tctttaaaatatttgtgatataaatcttaagtcttcatttagaagatccataatcatcggtgaagctagtcattttttcatgagtggaccaaatctaaaa 1635296  T
Q  612 aaggaaataaaatatattttgtgtgttgtcctaacaannnnnnnatccttaacaacactttatttatggattgaaagtgtcaaaatgtgatgaaatccgt 711  Q
    ||||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1635297 aaggaaataaaatatatttcgtgtgttgtcctaacaa-ttttttatccttaacaacactttatttatggattgaaagtgtcaaaatgtgatgaaatccat 1635395  T
Q  712 ctatcaaacaagtgtatatcttttaannnnnnnnctttaagttttaacaaataaactcatttgtggtaactaaatatatattattggggttgccaaaact 811  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1635396 ctatcaaacaagtgtatatcttttaattttttttctttaagttttaacaaataaactcatttgtggtaactaaatatatattattggggttgccaaaact 1635495  T
Q  812 acaccatagagaaggcagaggcatagcttcgcccttgcatgataatacgatctcaatttggttagttgggccaaaattgctagacctaaagtttggggga 911  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1635496 acaccatggagaaggaagaggcatagcttcgcccttgcatgataatacgatctcaatttggttagttgggccaaaattgctagacctaaagtttggggga 1635595  T
Q  912 ggtcttggtgtccaaacaactagagactctaatatttctcttattgagaaacttatttgggatctacttcaaggaaacaacaagttttgggtcaacattt 1011  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1635596 ggtcttggtgtccaaacaactagagactctaatatttctcttattgagaaacttatttgggatctacttcaagggaacaacaagttttgggtcaacattt 1635695  T
Q  1012 tgtctcacaagta 1024  Q
    |||||||||||||    
T  1635696 tgtctcacaagta 1635708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 55205709 - 55205861
Alignment:
Q  11 gagatgaatgaacaccatcgattgagatgaacggcggcacaatcggcgattgttggcgctgatgagaggg--aaacgaagaggttctaagggaagctgaa 108  Q
    |||||||||||||  |  |||||||||||||||||||||||||||| | |||||||||||||||||||||  | |||||||| |||  ||||||||        
T  55205709 gagatgaatgaacggcggcgattgagatgaacggcggcacaatcggtggttgttggcgctgatgagagggggagacgaagagattccgagggaagc---- 55205804  T
Q  109 aagagagtgagtaacgttcacgtatgaaagaagaagagaagagaagcgcgtgtttctcct 168  Q
     ||||||||||||| ||||||||| || ||||||  ||||||||||||||||||||||||    
T  55205805 -agagagtgagtaaagttcacgtaagagagaaga--agaagagaagcgcgtgtttctcct 55205861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 753 - 801
Target Start/End: Original strand, 29672266 - 29672314
Alignment:
Q  753 ttttaacaaataaactcatttgtggtaactaaatatatattattggggt 801  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||||||    
T  29672266 ttttaacaaataaactcatttgtggtagcataatatatattattggggt 29672314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 50348193 - 50348253
Alignment:
Q  246 tgtcactcatccaaggccctaaatggggtaaatggagctggtggtaaatggagcatacctg 306  Q
    ||||| ||||||||  |||||||||| ||||||| |||  |||||||||||||||||||||    
T  50348193 tgtcattcatccaataccctaaatggagtaaatgaagcatgtggtaaatggagcatacctg 50348253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 758 - 797
Target Start/End: Complemental strand, 20850885 - 20850846
Alignment:
Q  758 acaaataaactcatttgtggtaactaaatatatattattg 797  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  20850885 acaaataaattcattggtggtaactaaatatatattattg 20850846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 22536909 - 22536972
Alignment:
Q  241 ccacgtgtcactcatccaaggccctaaatggggtaaatggagctggtggtaaatggagcatacc 304  Q
    |||| ||||| ||||||||  ||||||||||||||||||||||   ||||||||| ||||||||    
T  22536909 ccacatgtcattcatccaacaccctaaatggggtaaatggagcatatggtaaatgaagcatacc 22536972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 796
Target Start/End: Complemental strand, 30252153 - 30252114
Alignment:
Q  757 aacaaataaactcatttgtggtaactaaatatatattatt 796  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  30252153 aacaaataaactcatttgtagtaactaaatatatgttatt 30252114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 1e-68; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 46164697 - 46164545
Alignment:
Q  11 gagatgaatgaacaccatcgattgagatgaacggcggcacaatcggcgattgttggcgctgatgagagggaaacgaagaggttctaagggaagctgaaaa 110  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46164697 gagatgaatgaacaccagcgattgagatgaacggcggcacaatcggcggttgttggcgctgatgacagggaaacgaagaggttctaagggaagctgaaaa 46164598  T
Q  111 gagagtgagtaacgttcacgtatgaaagaagaagagaagagaagcgcgtgttt 163  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  46164597 gagagtgggcaacgttcacgtatgaaagaagaagagaagagaagcgcgtgttt 46164545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 10091779 - 10091632
Alignment:
Q  11 gagatgaatgaacaccatcgattgagatgaacggcggcacaatcggcgattgttggcgctgatgagagggaaacgaagaggttctaagggaagctgaaaa 110  Q
    |||||||||||||| |  ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  10091779 gagatgaatgaacagcggcgattgagatgaacggcggcacaatcgacggttgttggcgctgatgagagggaaacgaagaggttttgagggaagctgaaaa 10091680  T
Q  111 gagagtgagtaacgttcacgtatgaaagaagaagagaagagaagcgcgtgt 161  Q
     |||| ||||||| ||||| |||||    |||||||||||||| |||||||    
T  10091679 cagagcgagtaactttcacttatga---gagaagagaagagaaacgcgtgt 10091632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 46169358 - 46169428
Alignment:
Q  241 ccacgtgtcactcatccaaggccctaaatggggtaaatggagctggtggtaaatggagcatacctgcgctc 311  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46169358 ccacatgtcactcatccaagaccctaaatggggtaaatggagctggtggtaaatggagcatacctgcgctc 46169428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 46513375 - 46513522
Alignment:
Q  11 gagatgaatgaacaccatcgattgagatgaacggcggcacaatcggcgattgttggcgctgatgaga-gggaaacgaagaggttctaagggaagctgaaa 109  Q
    ||||||||||||||| |  ||||||||||||||||| ||||||||||| ||||||| |||| ||||| |||| |||||||| |||| ||||||||| |||    
T  46513375 gagatgaatgaacac-agagattgagatgaacggcgacacaatcggcggttgttggtgctggtgagaggggagacgaagagattctgagggaagctcaaa 46513473  T
Q  110 agagagtgagtaacgttcacgtatgaaagaagaagagaagagaagcgcgtgtt 162  Q
    |||||||  ||||||||||||||    |||||||||||||| |||||||||||    
T  46513474 agagagt--gtaacgttcacgta--ctagaagaagagaagacaagcgcgtgtt 46513522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 26339834 - 26339945
Alignment:
Q  11 gagatgaatgaacaccatcgattgagatgaacggcggcacaatcggcgattgttggcgctgatgaga-gggaaacgaagaggttctaagggaagctgaaa 109  Q
    |||||||||||||| |  | ||||| ||||||||||| | ||||| |||||||||||| |||||||| |||| | |||||| |||  |||||||||||||    
T  26339834 gagatgaatgaacaacgacaattgatatgaacggcggaataatcgacgattgttggcggtgatgagaggggagaggaagagattccgagggaagctgaaa 26339933  T
Q  110 agagagtgagta 121  Q
    ||||||||||||    
T  26339934 agagagtgagta 26339945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 10092351 - 10092414
Alignment:
Q  241 ccacgtgtcactcatccaaggccctaaatggggtaaatggagctggtggtaaatggagcatacc 304  Q
    |||| ||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||    
T  10092351 ccacatgtcattcatccaagaccttaaatggggtaaatggagctgatggtaaatggagcatacc 10092414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 46513595 - 46513660
Alignment:
Q  241 ccacgtgtcactcatccaaggccctaaatggggtaaatggagctggtggtaaatggagcatacctg 306  Q
    |||||||||| ||||||||| |||||||| |||||||| |||||| |||||||| |||||||||||    
T  46513595 ccacgtgtcattcatccaagtccctaaattgggtaaatagagctgatggtaaatcgagcatacctg 46513660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 46164469 - 46164427
Alignment:
Q  241 ccacgtgtcactcatccaaggccctaaatggggtaaatggagc 283  Q
    |||| ||||||||||||||| ||||||||||||||||||||||    
T  46164469 ccacatgtcactcatccaagaccctaaatggggtaaatggagc 46164427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 1e-68; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 48986282 - 48986130
Alignment:
Q  11 gagatgaatgaacaccatcgattgagatgaacggcggcacaatcggcgattgttggcgctgatgagagggaaacgaagaggttctaagggaagctgaaaa 110  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48986282 gagatgaatgaacaccagcgattgagatgaacggcgacacaatcggcggttgttggcgctgatgacagggaaacgaagaggttctaagggaagctgaaaa 48986183  T
Q  111 gagagtgagtaacgttcacgtatgaaagaagaagagaagagaagcgcgtgttt 163  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48986182 gagagtgggtaacgttcacgtatgaaagaagaagagaagagaagcgcgtgttt 48986130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 48990944 - 48991015
Alignment:
Q  241 ccacgtgtcactcatccaaggccctaaatggggtaaatggagctggtggtaaatggagcatacctgcgctca 312  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48990944 ccacatgtcactcatccaagaccctaaatggggtaaatggagctggtggtaaatggagcatacctgcgctca 48991015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 48986054 - 48985980
Alignment:
Q  241 ccacgtgtcactcatccaaggccctaaatggggtaaatggagctggtggtaaatggagcatacctgcgctcattt 315  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48986054 ccacatgtcactcatccaagaccctaaatgaggtaaatggagctggtggtaaatggagcatacctgcgctcattt 48985980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 25492045 - 25492108
Alignment:
Q  248 tcactcatccaaggccctaaatggggtaaatggagctggtggtaaatggagcatacctgcgctc 311  Q
    ||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  25492045 tcactcatccaagaccctaaatggggtatatggagttggtggtaaatggagcatacctgcgctc 25492108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 52433043 - 52432980
Alignment:
Q  241 ccacgtgtcactcatccaaggccctaaatggggtaaatggagctggtggtaaatggagcatacc 304  Q
    |||||||||| ||||||||| |||||||||||||||||  ||||| ||||||||||||||||||    
T  52433043 ccacgtgtcattcatccaagaccctaaatggggtaaataaagctgatggtaaatggagcatacc 52432980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 748 - 795
Target Start/End: Complemental strand, 39909855 - 39909808
Alignment:
Q  748 ttaagttttaacaaataaactcatttgtggtaactaaatatatattat 795  Q
    |||| |||| |||||||||||||||||| |||||||| ||||||||||    
T  39909855 ttaatttttgacaaataaactcatttgtagtaactaattatatattat 39909808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 19880772 - 19880814
Alignment:
Q  241 ccacgtgtcactcatccaaggccctaaatggggtaaatggagc 283  Q
    |||| ||||| ||||||||| ||||||||||||||||||||||    
T  19880772 ccacttgtcagtcatccaagaccctaaatggggtaaatggagc 19880814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 758 - 801
Target Start/End: Complemental strand, 5033596 - 5033553
Alignment:
Q  758 acaaataaactcatttgtggtaactaaatatatattattggggt 801  Q
    ||||||||||||||||||||||  ||||||||||||||||||||    
T  5033596 acaaataaactcatttgtggtatttaaatatatattattggggt 5033553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 8740511 - 8740448
Alignment:
Q  241 ccacgtgtcactcatccaaggccctaaatggggtaaatggagctggtggtaaatggagcatacc 304  Q
    |||| ||||| ||||||||  ||||||||||||||||||||||   |||||||| |||||||||    
T  8740511 ccacatgtcattcatccaataccctaaatggggtaaatggagcatatggtaaattgagcatacc 8740448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 758 - 798
Target Start/End: Original strand, 43487277 - 43487317
Alignment:
Q  758 acaaataaactcatttgtggtaactaaatatatattattgg 798  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  43487277 acaaataatctcatttgtggtagctaaatatatattattgg 43487317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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