View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17455_low_16 (Length: 272)
Name: NF17455_low_16
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17455_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 6646288 - 6646039
Alignment:
| Q |
9 |
agagcactggaagaacaataagaccacttgtggttaggcaacactcggttatcttctcaaattcttgaagacacgatcttgaattaacataatttcttga |
108 |
Q |
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| T |
6646288 |
agagtactggaagaacaataagaccacttgtggttaggcaacactcggttatcttctcaaattcttgaagacacgatcttgaattaacataatttcttga |
6646189 |
T |
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| Q |
109 |
aaatactattacagcaactttgcaatcttctataacattgagaactgaggttggtatttctcgatcaccgcttccaagcttctcatcatcccaaaaaaca |
208 |
Q |
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| T |
6646188 |
aaatactattacagcaactttgcaatcttctataacattcaaaattgaggttggtattcctcgatcaccgcttccaagcttctcatcatcccagaaaaca |
6646089 |
T |
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| Q |
209 |
tgaaaccgagattttctattaagagctgtatagataccggtagcaaaaga |
258 |
Q |
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| T |
6646088 |
tgaaaccgagattttctattaagagctgtatagataccggtagcaaaaga |
6646039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 6627683 - 6627818
Alignment:
| Q |
39 |
tggttaggcaacactcggttatcttctcaaattcttgaagacacgatcttgaattaacataatttcttgaaaatactattacagcaactttgcaatcttc |
138 |
Q |
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| T |
6627683 |
tggttcggcaacactcagttatttttttaaattcatgaagacacgaccttgaattgaaatagtctcttgaaaatacaattacaaaaactttgcaatctct |
6627782 |
T |
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| Q |
139 |
tataacattgagaactgaggttggtatttctcgatc |
174 |
Q |
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| T |
6627783 |
tataacattgagcacagaggttggtttttctcgatc |
6627818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 6506662 - 6506764
Alignment:
| Q |
45 |
ggcaacactcggttatcttctcaaattcttgaagacacgatcttgaattaacataatttcttgaaaatactattacagcaactttgcaatcttctataac |
144 |
Q |
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||||||||| |||||| ||||| ||||||||||||||| |||||||||||| |||||| |||||||||| |||||| | | || ||||||| | ||||| |
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| T |
6506662 |
ggcaacactgggttattttctccaattcttgaagacaccatcttgaattaaaataattctttgaaaatacaattacaactatttcgcaatctccaataac |
6506761 |
T |
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| Q |
145 |
att |
147 |
Q |
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||| |
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| T |
6506762 |
att |
6506764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 6503155 - 6503257
Alignment:
| Q |
45 |
ggcaacactcggttatcttctcaaattcttgaagacacgatcttgaattaacataatttcttgaaaatactattacagcaactttgcaatcttctataac |
144 |
Q |
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||||||||| |||||| ||||| ||||||||||||||| ||||||| ||| |||||| ||||||||| || ||||||| | ||||||||||||||| |
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| T |
6503155 |
ggcaacactgggttattttctccaattcttgaagacaccatcttgatttagtataattctttgaaaatatgatcacagcaatctcgcaatcttctataac |
6503254 |
T |
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| Q |
145 |
att |
147 |
Q |
| |
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||| |
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| T |
6503255 |
att |
6503257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 147
Target Start/End: Complemental strand, 6737688 - 6737589
Alignment:
| Q |
48 |
aacactcggttatcttctcaaattcttgaagacacgatcttgaattaacataatttcttgaaaatactattacagcaactttgcaatcttctataacatt |
147 |
Q |
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||||||| ||||| ||||| ||||||||||||||| |||| |||||| |||||| |||| ||||| | |||| |||||||||||||||| || ||||| |
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| T |
6737688 |
aacactcagttattttctccaattcttgaagacaccatctagaattagtataattctttgataatacgactacaacaactttgcaatcttcaatcacatt |
6737589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 6810832 - 6810758
Alignment:
| Q |
40 |
ggttaggcaacactcggttatcttctcaaattcttgaagacacgatcttgaattaacataatttcttgaaaatac |
114 |
Q |
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| T |
6810832 |
ggttcggcaacattcggttattttctccaattcttgaagacaccgtgttgaattagcataatttattgaaaatac |
6810758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 6551346 - 6551473
Alignment:
| Q |
20 |
agaacaataagaccacttgtggttaggcaacactcggttatcttctcaaattcttgaagacacgatcttgaattaacataatttcttgaaaatactatta |
119 |
Q |
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|||||| |||||||| ||| ||| ||||||| || ||||| |||| |||||||| ||||| ||||| |||| | |||||||||||||||| |||| |
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| T |
6551346 |
agaacagtaagaccagatgttgttcggcaacattcagttattttcttcaattcttgtagacatcgtcttgtattagcctaatttcttgaaaatatgatta |
6551445 |
T |
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| Q |
120 |
cagcaactttgcaatcttctataacatt |
147 |
Q |
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| T |
6551446 |
caacaattttgcactttcctataacatt |
6551473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 6523885 - 6523922
Alignment:
| Q |
45 |
ggcaacactcggttatcttctcaaattcttgaagacac |
82 |
Q |
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|||||||||||||||| ||||| ||||||||||||||| |
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| T |
6523885 |
ggcaacactcggttattttctcgaattcttgaagacac |
6523922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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