View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17455_low_19 (Length: 246)
Name: NF17455_low_19
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17455_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 48410314 - 48410551
Alignment:
| Q |
4 |
tggcacaaagatgatactttacacaaaatggactgaaaataagcaactaaaatggtacacatttttgcatccaacagaaatgcatatagaataaaattct |
103 |
Q |
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| T |
48410314 |
tggcacaaagatgatactttacacaagatggactgaaaataagcaactaaaatggtacacatttttgcatccaacagaagtgcatatagaataaaattct |
48410413 |
T |
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| Q |
104 |
tagcttgatgtccagatatagacctggcctccacttgtagctcctgctagcatcccaacctcacaagagtttgcatcgaatctgcatggaattgcagata |
203 |
Q |
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| T |
48410414 |
tagcttgatgtccagatatagacctggcctccacttgtagctcctgctagcatcccaacctcacaagagtttgcatcaaatctgcatggaattgcagata |
48410513 |
T |
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| Q |
204 |
tgtgtgggctctgtagagtctttatttttgccctttga |
241 |
Q |
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| T |
48410514 |
tgtgtgggctctgtagtgtctttattgttgccctttga |
48410551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 48421975 - 48422110
Alignment:
| Q |
88 |
tatagaataaaattcttagcttgatgtccagatatagacctggcctccacttgtagctcctgctagcatcccaacctcacaagagtttgcatcgaatctg |
187 |
Q |
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| T |
48421975 |
tatagaataaaaatcttagctcaatgtccaaacatagacctggcctccgctactacctcctgctaacatcccaacctcataagagtgtgcatcaaattta |
48422074 |
T |
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| Q |
188 |
catggaattgcagatatgtgtgggctctgtagagtc |
223 |
Q |
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| T |
48422075 |
agtggatttgcagatatgggtggactctctagagtc |
48422110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 48416726 - 48416858
Alignment:
| Q |
88 |
tatagaataaaattcttagcttgatgtccagatatagacctggcctccacttgtagctcctgctagcatcccaacctcacaagagtttgcatcgaatctg |
187 |
Q |
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| T |
48416726 |
tatagaataaaaatcttagctcaatgtccaaacatagacttggccccagct---agctcctgctaacatcccaacctcataagagtgtgcatcaaattta |
48416822 |
T |
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| Q |
188 |
catggaattgcagatatgtgtgggctctgtagagtc |
223 |
Q |
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| T |
48416823 |
agtggaattgcagatatgagtgggctttctagagtc |
48416858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 48416460 - 48416555
Alignment:
| Q |
3 |
ttggcacaaagatgatactttacacaaaatggac-tgaaaataagcaactaaaatggtacacatttttgcatccaacagaaatgcatatagaataa |
97 |
Q |
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|||||| | |||||||||||||||||||| | | |||| ||| |||| |||||||||||| ||||||||||||| |||| |||||||||||||| |
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| T |
48416460 |
ttggcatatagatgatactttacacaaaaaaggcatgaagataggcaaataaaatggtacaagtttttgcatccaatagaagtgcatatagaataa |
48416555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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