View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17455_low_2 (Length: 784)

Name: NF17455_low_2
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17455_low_2
NF17455_low_2
[»] chr4 (4 HSPs)
chr4 (16-513)||(43804681-43805181)
chr4 (547-776)||(43804417-43804646)
chr4 (647-707)||(19453965-19454025)
chr4 (658-761)||(7057351-7057454)
[»] chr5 (3 HSPs)
chr5 (661-769)||(18900577-18900683)
chr5 (549-603)||(32117752-32117805)
chr5 (719-769)||(39646259-39646309)
[»] chr2 (2 HSPs)
chr2 (699-769)||(10582320-10582390)
chr2 (724-769)||(10931750-10931795)
[»] chr3 (2 HSPs)
chr3 (39-138)||(34843279-34843378)
chr3 (694-769)||(25181655-25181733)
[»] chr8 (1 HSPs)
chr8 (667-753)||(9573695-9573781)
[»] chr6 (4 HSPs)
chr6 (727-769)||(24762296-24762338)
chr6 (557-601)||(6076050-6076093)
chr6 (651-695)||(30863913-30863957)
chr6 (724-753)||(12229585-12229614)
[»] chr1 (2 HSPs)
chr1 (725-764)||(49520017-49520056)
chr1 (658-764)||(18926142-18926248)
[»] chr7 (1 HSPs)
chr7 (699-769)||(8688186-8688255)


Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 16 - 513
Target Start/End: Complemental strand, 43805181 - 43804681
Alignment:
Q  16 gattttgtgctgacactgtcaaccagacgatggtaatggaatgggtccagaagcaatgcaacgctgcatgagttttggattttcggataagatctcagaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43805181 gattttgtgctgacactgtcaaccagacgatggtaatggaatgggtccagaagcaatgcaacgctgcatgagttttggattttcggataagatctcagaa 43805082  T
Q  116 tttgcaattggacagtgtatggactatggcattctttattctaagtatttggtattt-cttgtatattttatttttcaatttggccgtgcagatggaaac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43805081 tttgcaattggacagtgtatggactatggcattctttattctaagtatttggtattttcttgtatattttatttttcaatttggccgtgcagatggaaac 43804982  T
Q  215 ggttttaagactggtagtatgagattgggtgcagatgcaatcgtcttcagctgccacgtgaatgatatgtaagggcttgaaaacagaacttcgcatgact 314  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43804981 ggttttaagactggtagtatgagattgggtgcagatgcaattgtcttcagctgccacgtgaatgatatgtaagggcttgaaaacagaacttcgcatgact 43804882  T
Q  315 ttatgttatattttgtttatgcattatgtttctaactattttgacatgatgtggctaccttaatttgtatatcgatacagaagtttagcctgaaacaact 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43804881 ttatgttatattttgtttatgcattatgtttctaactattttgacatgatgtggctaccttaatttgtatatcgatacagaagtttagcctgaaacaact 43804782  T
Q  415 gtaaattactactctaagtctaagggtgtatttcattacaacttta-aaaactgcctttcgtccttg-aaaaaatgcttgttgaattatttatcatgatg 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  43804781 gtaaattactactctaagtctaagggtgtatttcattacaactttaaaaaactgcctttcgtccttgaaaaaaatgcttgttgaattatttattatgatg 43804682  T
Q  513 c 513  Q
    |    
T  43804681 c 43804681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 547 - 776
Target Start/End: Complemental strand, 43804646 - 43804417
Alignment:
Q  547 cgctaacctcaataattcaagattctaagtcatcaattaaatgacaaaagaaaagtgattggtcatacaaaattaacaaacacagttgtttgctacaccg 646  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43804646 cgctaacctcaataattcaagattctaagtcatcaattaaaggacaaaagaaaagtgattggtcatacaaaattaacaaacacagttgtttgctacaccg 43804547  T
Q  647 aaaataggtaatgattcattagaatgaatcagaattcatcctaatgaatcaagattcatcaaagtggatcatgatttaagatgagattcatgttcaaaat 746  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43804546 aaaataggtaatgattcattagaatgaatcagaattcatcctaatgaatcaagattcatcaaagtggatcatgatttaagatgagattcatgttcaaaat 43804447  T
Q  747 agatacaaactagagattcatattcttgga 776  Q
    |||||||||||||||||||||||| |||||    
T  43804446 agatacaaactagagattcatattattgga 43804417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 647 - 707
Target Start/End: Complemental strand, 19454025 - 19453965
Alignment:
Q  647 aaaataggtaatgattcattagaatgaatcagaattcatcctaatgaatcaagattcatca 707  Q
    |||||||||| ||||||||||||||||||||  ||||||| || ||||||  |||||||||    
T  19454025 aaaataggtagtgattcattagaatgaatcaagattcatcatagtgaatcgggattcatca 19453965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 658 - 761
Target Start/End: Complemental strand, 7057454 - 7057351
Alignment:
Q  658 tgattcattagaatgaatcagaattcatcctaatgaatcaagattcatcaaagtggatcatgatttaagatgagattcatgttcaaaatagatacaaact 757  Q
    |||||||| |||| || |||||||||||| |  |||||| |||||||||  | || |||  || | |||||||||||||| || |||||||||| |||||    
T  7057454 tgattcataagaacgattcagaattcatcgttgtgaatcgagattcatcttaatgtatcgggactcaagatgagattcatatttaaaatagatataaact 7057355  T
Q  758 agag 761  Q
    ||||    
T  7057354 agag 7057351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 661 - 769
Target Start/End: Complemental strand, 18900683 - 18900577
Alignment:
Q  661 ttcattagaatgaatcagaattcatcctaatgaatcaagattcatcaaagtggatcatgatttaagatgagattcatgttcaaaatagatacaaactaga 760  Q
    ||||||| ||||| |||||||||||| || |||||| |||||||||| | | ||||| |||| |||||||||||||||||  ||||||||||| ||||||    
T  18900683 ttcattacaatgagtcagaattcatcatagtgaatcgagattcatcataat-gatcacgattaaagatgagattcatgtt-gaaatagatacacactaga 18900586  T
Q  761 gattcatat 769  Q
    |||||||||    
T  18900585 gattcatat 18900577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 603
Target Start/End: Complemental strand, 32117805 - 32117752
Alignment:
Q  549 ctaacctcaataattcaagattctaagtcatcaattaaatgacaaaagaaaagtg 603  Q
    ||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||    
T  32117805 ctaacctcaatgattcaagattc-aagtcataaatcaaatgacaaaagaaaagtg 32117752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 719 - 769
Target Start/End: Complemental strand, 39646309 - 39646259
Alignment:
Q  719 gatttaagatgagattcatgttcaaaatagatacaaactagagattcatat 769  Q
    |||| |||||||||||||||||||| ||||||||| |||| | ||||||||    
T  39646309 gattcaagatgagattcatgttcaatatagatacacactaaaaattcatat 39646259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 699 - 769
Target Start/End: Original strand, 10582320 - 10582390
Alignment:
Q  699 gattcatcaaagtggatcatgatttaagatgagattcatgttcaaaatagatacaaactagagattcatat 769  Q
    ||||||||| || | |||| || | |||||||||||||||||||||||||||||| |||||||||||||||    
T  10582320 gattcatcatagagaatcaggactcaagatgagattcatgttcaaaatagatacacactagagattcatat 10582390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 724 - 769
Target Start/End: Original strand, 10931750 - 10931795
Alignment:
Q  724 aagatgagattcatgttcaaaatagatacaaactagagattcatat 769  Q
    ||||||||||||||||||||| |||  ||| |||||||||||||||    
T  10931750 aagatgagattcatgttcaaattaggcacacactagagattcatat 10931795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 34843378 - 34843279
Alignment:
Q  39 cagacgatggtaatggaatgggtccagaagcaatgcaacgctgcatgagttttggattttcggataagatctcagaatttgcaattggacagtgtatgga 138  Q
    |||| ||||||  ||| |||| ||| |||||||||| |||||||||||||||||||||||| ||||| |  ||| |  || | |||||||||||||||||    
T  34843378 cagatgatggtggtggcatggatccggaagcaatgcgacgctgcatgagttttggattttcagataaaaattcaaagctttctattggacagtgtatgga 34843279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 694 - 769
Target Start/End: Original strand, 25181655 - 25181733
Alignment:
Q  694 atcaagattcatcaaagtggatcatgatttaagatgagattcatgttcaaa---atagatacaaactagagattcatat 769  Q
    |||||||||||||| |||| |||  |||||||||||| |||||||| ||||   ||||||| | |||||||||||||||    
T  25181655 atcaagattcatcatagtgaatcgggatttaagatgatattcatgtccaaatagatagatatacactagagattcatat 25181733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 667 - 753
Target Start/End: Original strand, 9573695 - 9573781
Alignment:
Q  667 agaatgaatcagaattcatcctaatgaatcaagattcatcaaagtggatcatgatttaagatgagattcatgttcaaaatagataca 753  Q
    ||||| |||||||||||| |  | |||||| |||||||||| | |  ||||||||| |||||||||||||||| |||| ||||||||    
T  9573695 agaataaatcagaattcaccacagtgaatccagattcatcataataaatcatgattcaagatgagattcatgtccaaagtagataca 9573781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 727 - 769
Target Start/End: Complemental strand, 24762338 - 24762296
Alignment:
Q  727 atgagattcatgttcaaaatagatacaaactagagattcatat 769  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  24762338 atgagattcatgttcgaaatagatacacactagagattcatat 24762296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 557 - 601
Target Start/End: Original strand, 6076050 - 6076093
Alignment:
Q  557 aataattcaagattctaagtcatcaattaaatgacaaaagaaaag 601  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||    
T  6076050 aataattcaagattc-aagtcataaattaaatgacaaaagaaaag 6076093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 651 - 695
Target Start/End: Original strand, 30863913 - 30863957
Alignment:
Q  651 taggtaatgattcattagaatgaatcagaattcatcctaatgaat 695  Q
    ||||||||||||||||||||||||||| |||||||| || |||||    
T  30863913 taggtaatgattcattagaatgaatcacaattcatcatagtgaat 30863957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 724 - 753
Target Start/End: Original strand, 12229585 - 12229614
Alignment:
Q  724 aagatgagattcatgttcaaaatagataca 753  Q
    ||||||||||||||||||||||||||||||    
T  12229585 aagatgagattcatgttcaaaatagataca 12229614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 725 - 764
Target Start/End: Original strand, 49520017 - 49520056
Alignment:
Q  725 agatgagattcatgttcaaaatagatacaaactagagatt 764  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  49520017 agatgagattcatgtccaaaatagatacacactagagatt 49520056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 658 - 764
Target Start/End: Complemental strand, 18926248 - 18926142
Alignment:
Q  658 tgattcattagaatgaatcagaattcatcctaatgaatcaagattcatcaaagtggatcatgatttaagatgagattcatgttcaaaatagatacaaact 757  Q
    |||||||||||||||||| || |||  |  |||||||||||||||| ||| | || |||| |||  || |||||| |||| | |||||||||||||  ||    
T  18926248 tgattcattagaatgaattaggatttttaataatgaatcaagattcttcataatgaatcaggatacaaaatgagactcatatccaaaatagatacactct 18926149  T
Q  758 agagatt 764  Q
    |||||||    
T  18926148 agagatt 18926142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 699 - 769
Target Start/End: Complemental strand, 8688255 - 8688186
Alignment:
Q  699 gattcatcaaagtggatcatgatttaagatgagattcatgttcaaaatagatacaaactagagattcatat 769  Q
    ||||||||| | || |||| |||| |||||||||||||||| | ||||||||||| | |||||||||||||    
T  8688255 gattcatcataatgaatcaggattcaagatgagattcatgtgc-aaatagatacacaatagagattcatat 8688186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University