View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17455_low_21 (Length: 238)
Name: NF17455_low_21
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17455_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45724894 - 45725129
Alignment:
| Q |
1 |
caatcaggtccctataaacataagctccaaccactcacacc----------aactctgcatgcactgtgagtgagtgaatgatatttgcattcgtcacct |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
45724894 |
caatcaggtccctataaacataagctccaaccactcacacagtcccacactaactctgcatgcactgtgggtga----atgatatttgcattcgtcacct |
45724989 |
T |
|
| Q |
91 |
aaacgtagtagctaaacaagcaaattaattaaataaccaaaagtatataaaatcaaattaaatgcattctcaacaattttggggattgaggagagg---- |
186 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45724990 |
aaacgtagtagctaaacaagataattaattaaataaccaaaagtatataaaatcaaattaaatgcattctcaacaattttggggattgaggagagggact |
45725089 |
T |
|
| Q |
187 |
---gactcatgactcatgcatagtattcatggaagcgtgt |
223 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
45725090 |
catgactcatgactcatgcatagtattcatggaagcgtgt |
45725129 |
T |
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